Proteopedia:DIY:Scenes: Difference between revisions

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Jaime Prilusky (talk | contribs)
ConfirmAccount, Editor, Journal, Mutation, Next, Print3D, Tester, any2jmol, Bureaucrats, Administrators
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== Tacrine, 1acj ==
== Tacrine, 1acj ==
<applet load='1acj' size='200' align='right' />
<applet scene='Proteopedia:DIY:Scenes/Tacrine_1acj/1' size='200' align='right' />


*load molecule 1acj
*[load molecule] By PDB code, load 1acj
*selections tab: select none
*[selections] select none
*selections tab: "build your selection" choose group "all protein". add to selection
*[selections] "build your selection" choose group "all protein". add to selection
*colors tab: orange 50% transparency
*[colors] orange 50% transparency
*selections tab: "build your selection" limit to residues 84,300, replace selection
*[selections] "build your selection" limit to residues 84,300, replace selection
*representations tab: ball-and-stick and cartoon, set representation
*[representations] ball-and-stick and cartoon, set representation
*colors tab: magenta
*[colors] magenta
*labels tab: select none, mouse click selects atom, click on atom in tacrine molecule, add label "tacrine", color label black, label size 20, pointer on
*[labels] select none, mouse click selects atom, click on atom in tacrine molecule, add label "tacrine", color label black, label size 20, pointer on
*save scene tab: give scene name and description, save scene
*[save scene] give scene name and description, save scene
 
<scene name='Proteopedia:DIY:Scenes/Tacrine_1acj/1'>TextToBeDisplayed</scene>

Revision as of 08:13, 7 June 2009

Here you find complete step-by-step instructions on how to create featured Proteopedia scenes. You may simply learn from them, or use one of them as a basis for your own scene, changing parameters, selections and colors.

Common basic first steps:

  • Open on a separate browser window the page where to insert the scene
  • Click on the "edit this page" tab
  • Click on [show] Scene authoring tools (SAT)
  • Remember to frequently save you work

Tacrine, 1acjTacrine, 1acj

Drag the structure with the mouse to rotate
  • [load molecule] By PDB code, load 1acj
  • [selections] select none
  • [selections] "build your selection" choose group "all protein". add to selection
  • [colors] orange 50% transparency
  • [selections] "build your selection" limit to residues 84,300, replace selection
  • [representations] ball-and-stick and cartoon, set representation
  • [colors] magenta
  • [labels] select none, mouse click selects atom, click on atom in tacrine molecule, add label "tacrine", color label black, label size 20, pointer on
  • [save scene] give scene name and description, save scene

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Jaime Prilusky, Eran Hodis, Eric Martz
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