User:Michael Strong/H1N1: Difference between revisions
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== HA Protein Structural Homolgy Model == | |||
<applet load='MSHA2.pdb' size='300' frame='true' align='center' caption='HA Homology Model, Mexico Strain, [http://www.ncbi.nlm.nih.gov/nuccore/FJ998208 A/Mexico/InDRE4487/2009 HA], residues 16-341, 83% sequence identity to pdp template [http://proteopedia.org/wiki/index.php/3gbn 3gbn]' scene ='User:Michael_Strong/H1N1/HA/MSA/1/1'/> | |||
=== HA Sequence Polymorphisms === | |||
{| class="wikitable" | |||
|Protein | |||
|Polymorphism | |||
|Strain with Polymorphism | |||
|Number of Strains with Polymorphism | |||
|---- | |||
|HA | |||
|V7I | |||
|gi|237624327_A/swine/Alberta/O | |||
|1 | |||
|---- | |||
|HA | |||
|L8M | |||
|gi|227831776_A/California/06/2 | |||
|5 | |||
|---- | |||
|HA | |||
|A13T | |||
|gi|229536010_A/Kansas/03/2009 | |||
|1 | |||
|---- | |||
|HA | |||
|N48D | |||
|gi|229536049_A/Arizona/02/2009 | |||
|1 | |||
|<scene name='User:Michael_Strong/H1N1/HA/MSA/48/1'>48</scene> | |||
|---- | |||
|HA | |||
|L49I | |||
|gi|229535997_A/South_Carolina/ | |||
|2 | |||
|<scene name='User:Michael_Strong/H1N1/HA/MSA/49/1'>49</scene> | |||
|---- | |||
|HA | |||
|I96V | |||
|gi|229598877_A/Ohio/07/2009 | |||
|1 | |||
|<scene name='User:Michael_Strong/H1N1/HA/MSA/96/1'>96</scene> | |||
|---- | |||
|HA | |||
|S100P | |||
|gi|229535949_A/California/04/2 | |||
|5 | |||
|<scene name='User:Michael_Strong/H1N1/HA/MSA/100/1'>100</scene> | |||
|---- | |||
|HA | |||
|N104K | |||
|gi|229892708_A/Canada-AB/RV153 | |||
|1 | |||
|<scene name='User:Michael_Strong/H1N1/HA/MSA/104/1'>104</scene> | |||
|---- | |||
|HA | |||
|V125M | |||
|gi|229598896_A/Texas/15/2009 | |||
|2 | |||
|<scene name='User:Michael_Strong/H1N1/HA/MSA/125/1'>125</scene> | |||
|---- | |||
|HA | |||
|V149I | |||
|gi|229536088_A/Indiana/09/2009 | |||
|1 | |||
|<scene name='User:Michael_Strong/H1N1/HA/MSA/149/1'>149</scene> | |||
|---- | |||
|HA | |||
|A214T | |||
|gi|229535949_A/California/04/2 | |||
|2 | |||
|<scene name='User:Michael_Strong/H1N1/HA/MSA/214/1'>214</scene> | |||
|---- | |||
|HA | |||
|Y215N | |||
|gi|237624327_A/swine/Alberta/O | |||
|1 | |||
|<scene name='User:Michael_Strong/H1N1/HA/MSA/215/1'>215</scene> | |||
|---- | |||
|HA | |||
|S220T | |||
|gi|229396494_A/Ohio/07/2009 | |||
|21 | |||
|<scene name='User:Michael_Strong/H1N1/HA/MSA/220/1'>220</scene> | |||
|---- | |||
|HA | |||
|F227L | |||
|gi|229598896_A/Texas/15/2009 | |||
|1 | |||
|<scene name='User:Michael_Strong/H1N1/HA/MSA/227/1'>227</scene> | |||
|---- | |||
|HA | |||
|D239G | |||
|gi|229892706A/Mexico/InDRE4114 | |||
|1 | |||
|<scene name='User:Michael_Strong/H1N1/HA/MSA/239/2'>239</scene> | |||
|---- | |||
|HA | |||
|D291E | |||
|gi|229535997_A/South_Carolina/ | |||
|2 | |||
|<scene name='User:Michael_Strong/H1N1/HA/MSA/291/1'>291</scene> | |||
|---- | |||
|HA | |||
|N293D | |||
|gi|229783398_A/New_York/1682/2 | |||
|1 | |||
|<scene name='User:Michael_Strong/H1N1/HA/MSA/293/2'>293</scene> | |||
|---- | |||
|HA | |||
|V338I | |||
|gi|229535949_A/California/04/2 | |||
|5 | |||
|<scene name='User:Michael_Strong/H1N1/HA/MSA/338/1'>338</scene> | |||
|---- | |||
|HA | |||
|A351V | |||
|gi|237624327_A/swine/Alberta/O | |||
|1 | |||
|---- | |||
|HA | |||
|I400V | |||
|gi|229484027_A/Canada-NS/RV153 | |||
|3 | |||
|---- | |||
|HA | |||
|V428I | |||
|gi|229598877_A/Ohio/07/2009 | |||
|4 | |||
|---- | |||
|HA | |||
|V444I | |||
|gi|237511819_A/Mexico/4108/200 | |||
|1 | |||
|---- | |||
|HA | |||
|I527F | |||
|gi|229892706A/Mexico/InDRE4114 | |||
|1 | |||
|---- | |||
|} | |||
<scene name='User:Michael_Strong/H1N1/HA/MSA/All/1'>All Polymorphisms</scene> | |||
===multiple sequence alignment of PB2=== | ===multiple sequence alignment of PB2=== | ||