User:Eric Martz/Sandbox 6: Difference between revisions

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Eric Martz (talk | contribs)
ConfirmAccount, Editor, Tester, Administrators
27,351 edits
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<div style="font-size:175%; padding-top:0.5em; padding-left:30.0px;">Welcome to Proteopedia,</div>
<div style="border:0px; padding:0px; margin=0px; line-height:2.0em; padding-left:30.0px;">The free, collaborative 3D encyclopedia of proteins & other molecules</div>
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<td align="left" width="50%">[[Proteopedia:About|About]] <font color="blue">•</font> [[Help:Editing|Editing]] <font color="blue">•</font> [[Help:Contents|Help]]</td>
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<table style="background: #D1FFE7; border:1px solid #94FFC8" cellspacing="5px" cellpadding="10px">
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<div style="font-size:120%" align="left">Currently featured article</div>
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<td>
<applet load='2q66' size='300' frame='false' scene='Proteopedia:Main_page_develop/2q66_initial/3' />
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<div style="font-size:130%; line-height:2.0em"><span style="color:green" align="center">Green</span> links change the 3D image!</div>
<div style="font-size:200%; line-height:2.0em">[[2q66]] - Poly(A) polymerase</div>
Poly(A) polymerase binds specifically to ATP and adds it the end of a mRNA chain. This structure contains an oligo(A) polynucleotide with 5 nucleotides, an ATP molecule, and a magnesium ion. …  In the <scene name='2q66/2q66_summary/1'>3D figure</scene>, the enzyme is shown as a blue backbone, the RNA chain in yellow, the ATP in red, the Mg<sup>++</sup> in green, and ALA154 in magenta. Several mechanisms are used to achieve the specificity for ATP. The Mg<sup>++</sup> is coordinated by <scene name='2q66/2q66_asp/2'>ASP100 and ASP102</scene>, and the Mg<sup>++</sup> coordinates with the phosphates of ATP, positioning the nucleotide in the active site. The adenine base is sandwiched between the <scene name='2q66/2q66_stacking/2'>terminal base of the RNA (in yellow) and VAL234 (in cyan)</scene>. [[2q66|Read more...]]
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<table style="background: #D1FFE7; border:1px solid #94FFC8" cellspacing="5px" cellpadding="10px" width="100%">
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<div style="font-size:120%; line-height:2.0em">'''What's new?'''</div>
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* [[Hemoglobin]] - the protein in your blood responsible for oxygen transport
* [[HIV-1 protease]] - a protein made by the HIV virus, crucial for infection
* [[Lac repressor]] - controls expression of bacterial enzymes involved in lactose metabolism
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* Mini-biography on [[Frederic M. Richards]], an eminent protein structure and function researcher
* [[Mechanosensitive_channels:_opening_and_closing]] - channels involved in touch, hearing, and in maintaining osmotic balance
* [[1e08]], an iron-iron hydrogenase transferring its electrons to a cytochrome
<div align="right">[[Proteopedia:What%27s_New| More]]...</div>
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<div align="center">Pages are easy to create and edit, and <font color='green'>'''Green links'''</font> are easy to make! </div>
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<div style="font-size:120%; line-height:2.0em">Step 3</div>
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[[Special:RequestAccount|Request an account]].<br/>''(Members of the scientific community, including students and educators.)''
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Get started with our narrated [[Proteopedia:Video_Guide|video guide]], then use our [[Help:Editing|editing-help page]] as a reference.
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Help expand existing pages like [[1twc]] or [[Prion proteins]]; or [[Help:Editing#How_To_Create_A_New_Page|start a new page]] on your favorite topic. We could use pages on [[DNA]], [[Trypsin]], & [[Myoglobin]], among [[Wanted pages|others]].
''(Consider joining the [[Proteopedia:Page of the Year Competition| Page of the Year Competition]] to win an iPod Touch.)''
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<div style="font-size:120%" align="left">What can Proteopedia do for me?</div>
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<div style="font-size:120%; line-height:2.0em">Scientists and Students</div>
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* Understand and communicate protein 3D structure-function relationships
** Example: [[1wsu|Elongation factor SelB]], the protein responsible for adding the 21<sup>st</sup> amino acid selenocysteine to a growing protein chain in bacteria, as seen in the PDB's [[Teaching_Scenes%2C_Tutorials%2C_and_Educators%27_Pages#Molecule_of_the_Month_.28MotM.29_Series|Molecule of the Month]].
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<table style="background: #D1FFE7; border:1px solid #94FFC8" cellspacing="5px" cellpadding="10px" width="100%">
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<div style="font-size:120%" align="left">Read the paper</div>
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<td valign="top">
''Proteopedia - a scientific 'wiki' bridging the rift between 3D structure and function of biomacromolecules'', '''Genome Biology''' 2008, 9:R121  [http://genomebiology.com/2008/9/8/R121 doi:10.1186/gb-2008-9-8-r121]
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{{Clear}}
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Revision as of 02:29, 3 May 2009

Welcome to Proteopedia,
The free, collaborative 3D encyclopedia of proteins & other molecules
About • Editing • Help Video Guide • Content (Topic Pages) • What's New
Currently featured article

PDB ID 2q66

Drag the structure with the mouse to rotate
Green links change the 3D image!
2q66 - Poly(A) polymerase

Poly(A) polymerase binds specifically to ATP and adds it the end of a mRNA chain. This structure contains an oligo(A) polynucleotide with 5 nucleotides, an ATP molecule, and a magnesium ion. … In the , the enzyme is shown as a blue backbone, the RNA chain in yellow, the ATP in red, the Mg++ in green, and ALA154 in magenta. Several mechanisms are used to achieve the specificity for ATP. The Mg++ is coordinated by , and the Mg++ coordinates with the phosphates of ATP, positioning the nucleotide in the active site. The adenine base is sandwiched between the . Read more...

Browse
Favorites
Find my protein/molecule
What's new?
  • Hemoglobin - the protein in your blood responsible for oxygen transport
  • HIV-1 protease - a protein made by the HIV virus, crucial for infection
  • Lac repressor - controls expression of bacterial enzymes involved in lactose metabolism
More...
  • All PDB entries (over 57,000) have pages

<inputbox> type=search width=20 buttonlabel=Go searchbuttonlabel=Search break=yes </inputbox>

  • Go takes you directly to the page if it exists,
  • Search gives you search results
More...
Want to contribute?
Pages are easy to create and edit, and Green links are easy to make!
Step 1
Step 2
Step 3

Request an account.
(Members of the scientific community, including students and educators.)

Get started with our narrated video guide, then use our editing-help page as a reference.

Help expand existing pages like 1twc or Prion proteins; or start a new page on your favorite topic. We could use pages on DNA, Trypsin, & Myoglobin, among others.

(Consider joining the Page of the Year Competition to win an iPod Touch.)

What can Proteopedia do for me?
Scientists and Students
Educators
Structural researchers
  • Understand and communicate protein 3D structure-function relationships

(You may protect your teaching pages from editing by others.)

(You may protect such pages from editing by others, or unwanted viewing pre-publication.)

Read the paper

Proteopedia - a scientific 'wiki' bridging the rift between 3D structure and function of biomacromolecules, Genome Biology 2008, 9:R121 doi:10.1186/gb-2008-9-8-r121

_

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