User:Susana Retamal/Sandbox1: Difference between revisions
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The N-terminal of the sequence considered is M (Met). | The N-terminal of the sequence considered is M (Met). | ||
The estimated half-life is: | '''The estimated half-life is''': | ||
*30 hours (mammalian reticulocytes, in vitro). | *30 hours (mammalian reticulocytes, in vitro). | ||
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- POS: The position of the AA in the SEQRES derived sequence. | - POS: The position of the AA in the SEQRES derived sequence. | ||
- SEQ: The SEQRES derived sequence in one letter code. | - SEQ: The SEQRES derived sequence in one letter code. | ||
- 3LATOM: The ATOM derived sequence in three letter code, including the AA's positions as they appear in the PDB file and the chain identifier. | - 3LATOM: The ATOM derived sequence in three letter code, including the AA's positions as they appear in the PDB file and the chain identifier. | ||
- SCORE: The normalized conservation scores. | - SCORE: The normalized conservation scores. | ||
- COLOR: The color scale representing the conservation scores (9 - conserved, 1 - variable). | - COLOR: The color scale representing the conservation scores (9 - conserved, 1 - variable). | ||
- CONFIDENCE INTERVAL: When using the bayesian method for calculating rates, a confidence interval is assigned to each of the inferred evolutionary conservation scores. | - CONFIDENCE INTERVAL: When using the bayesian method for calculating rates, a confidence interval is assigned to each of the inferred evolutionary conservation scores. | ||
- CONFIDENCE INTERVAL COLORS: When using the bayesian method for calculating rates. The color scale representing the lower and upper bounds of the confidence interval. | - CONFIDENCE INTERVAL COLORS: When using the bayesian method for calculating rates. The color scale representing the lower and upper bounds of the confidence interval. | ||
- MSA DATA: The number of aligned sequences having an amino acid (non-gapped) from the overall number of sequences at each position. | - MSA DATA: The number of aligned sequences having an amino acid (non-gapped) from the overall number of sequences at each position. | ||
- RESIDUE VARIETY: The residues variety at each position of the multiple sequence alignment. | - RESIDUE VARIETY: The residues variety at each position of the multiple sequence alignment. | ||