Getting Unremediated PDB Files: Difference between revisions
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Use the simple interface [http://www.umass.edu/microbio/chime/pe_beta/pe/protexpl/unremed.htm here at Eric Martz's UMASS site] to easily get July 31, 2007 unremediated pdb files [ftp://snapshots.wwpdb.org/ via ftp at the RCSB Protein Data Bank] in the directory 20070731. This is primarily for obtaining DNA before the residues were re-named DC, DG, DT, DA, for Protein Explorer/Chime.<br> | Use the simple interface [http://www.umass.edu/microbio/chime/pe_beta/pe/protexpl/unremed.htm here at Eric Martz's UMASS site] to easily get July 31, 2007 unremediated pdb files [ftp://snapshots.wwpdb.org/ via ftp at the RCSB Protein Data Bank] in the directory 20070731. This is primarily for obtaining DNA before the residues were re-named DC, DG, DT, DA, for Protein Explorer/Chime.<br> | ||
The March 16, 2009 unremediated versions are also available [ftp://snapshots.wwpdb.org/ via ftp at the RCSB Protein Data Bank] in the directory 20090316.<br> | The March 16, 2009 unremediated versions are also available [ftp://snapshots.wwpdb.org/ via ftp at the RCSB Protein Data Bank] in the directory 20090316.<br> | ||
These files come back in a compressed form. The 2007 files are .Z compressed, while the 2009 files are .gz compressed. Thus to get the two forms of 1d66:<br> | These files come back in a compressed form. The 2007 files are .Z compressed, while the 2009 files are .gz compressed.<br> | ||
Thus to get the two forms of 1d66:<br> | |||
For prior to 2007 remediation:<no wiki>ftp://snapshots.wwpdb.org/20070731/pub/pdb/data/structures/all/pdb/pdb1d66.ent.Z</no wiki> | For prior to 2007 remediation:<no wiki>ftp://snapshots.wwpdb.org/20070731/pub/pdb/data/structures/all/pdb/pdb1d66.ent.Z</no wiki> | ||