User:Eric Martz/Sandbox 6: Difference between revisions
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== | ==Homology Modeling== | ||
{| class="wikitable" style="text-align:center" | {| class="wikitable" style="text-align:center" | ||
|+ Templates for Homology Modeling of E. coli DnaC (245 amino acids) | |+ Templates for Homology Modeling of E. coli DnaC (245 amino acids) | ||
! Name !! PDB Code (Resolution) !! Released !! Length (amino acids) !! Template alignment length: range (%) !! Target alignment length: range (%) !! Aligned Sequence Identity !! | ! Name !! PDB Code (Resolution) !! Released !! Length (amino acids)<sup>a</sup> !! Template alignment length: range (%) !! Target alignment length: range (%) !! Aligned Sequence Identity !! Expectations* | ||
|- | |- | ||
| DnaC helicase loader ''Aquifex aeolicus'' || 3ec2 (2.7 Å) || Nov 25 2008 || 183 || 174: 6-179 (95%) || 163: 68-230 (67%) || 23% || 0.0006 | | DnaC helicase loader ''Aquifex aeolicus'' || 3ec2 (2.7 Å) || Nov 25 2008 || 183 || 174: 6-179 (95%) || 163: 68-230 (67%) || 23% || 0.0006; | ||
|- | |||
| Putative Primosome Component ''Streptococcus Pyogenes'' || 2qgz (2.4 Å) || Jul 24 2007 || 183 || 176: 107-300 (96%) || 183: 55-237 (75%) || 20% || 0.00027; 3.4e-28 | |||
|} | |} | ||
(a) Length is for amino acids with coordinates (excludes disordered residues). | |||
* First E value is from TargetDB.PDB.ORG; second is from Swiss-Model. | |||
==Homology Model of DnaC== | ==Homology Model of DnaC== | ||