User:Eric Martz/Cavities tests: Difference between revisions

Line 35:

==Gaps in the Template Model==

<applet load='Dnac_from_2ggz_a.pdb' size='500' frame='true' align='right'

The template was <scene name='User:Eric_Martz/Sandbox_4/2qgz/3'>~~2qgz~~</scene>. The portion of the template used was Glu107-Arg300. Only the amino-terminal 6 residues were not used as template (translucent). Note that there are <scene name='User:Eric_Martz/Sandbox_4/2qgz/5'>three loops</scene> in this segment of the template that lack coordinates due to [[disorder]] in the crystal (marked with spacefilled alpha-carbon atoms).

scene='User:Eric_Martz/Sandbox_4/2qgz/3' />

The template was 2QGZ (<scene name='User:Eric_Martz/Sandbox_4/2qgz/3'>initial scene</scene>). The portion of the template used was Glu107-Arg300. Only the amino-terminal 6 residues were not used as template (translucent). Note that there are <scene name='User:Eric_Martz/Sandbox_4/2qgz/5'>three loops</scene> in this segment of the template that lack coordinates due to [[disorder]] in the crystal (marked with spacefilled alpha-carbon atoms).

The missing loops are 202-205 (NGSV), 226-231 (EQATSW), and 268-275 (TIKGSDET). These gaps, which occur between the residues marked /\ below, were apparently ignored in making the model, which has a continuous main chain.

Below is the alignment produced by Swiss Model, used in making the 3D model. Vertical bars for identity were inserted by hand.

Below is the alignment produced by Swiss Model, used in making the 3D model. Vertical bars for identity were inserted by hand (I may have missed some).

<pre>

| | | | ||

Line 82:

Line 83:

</pre>

(Copied from Protein Explorer's sequence display.)

Below is the alignment of dnaC with 2QGZ according to TargetDB (see above).

<pre>

Target Query Results

There are 16 sequences that match your request.

ID: DR58 Latest update: 2007-09-21 E Value: 0.00028: view alignment

Lab: Northeast Structural Genomics Consortium

Name: Putative primosome component (Helicase loader).

Status: Selected, Cloned, Expressed, Soluble, Purified, Crystallized, Diffraction, Crystal Structure, In PDB

URL:

http://spine.nesg.org/target.cgi?id=DR58

Database Reference: PDB: 2QGZ PFAM: PF07319 MEGA: 3.40.50.300

Source Organism: Streptococcus pyogenes

Sequence:

MEKIGETMAKLGQNTRVNSDQLIQTILADPEVASFISQHHLSQEQINLSLSKFNQFLVERQ

KYQLKDPSYIAKGYQPILAMNEGYADVSYLETKELVEAQKQAAISERIQLVSLPKSYRHI

HLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKG

VSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKNVPVLILDDIGAEQATSWVRDEVLQVIL

QYRMLEELPTFFTSNYSFADLERKWATIKGSDETWQAKRVMERVRYLAREFHLEGANRR

Domain Annotation: Pfam

Other Sources:

Superfamily | TIGR Families | ProDom | iProClass | Prosite

Protein Properties:

Number of Residues Mol. Weight Avg. Hydropathy Score Charge pI Value

300 34146 -0.321 -4.5 5.4

ID: hso002001071.2 Latest update: 2008-09-07 E Value: 0.14: view alignment

Lab: RSGI

Status: Selected, Cloned, Expressed, Soluble, Purified, NMR Assigned, HSQC, NMR Structure, In PDB

Database Reference: PDB: 2EAO

Source Organism: Homo sapiens

Sequence:

SQPLLDRSIPDFTAFTTVDDWLSAIKMVQYRDSFLTAGFTSLQLVTQMTSEDLLRIGITLA

GHQKKILNSIHSMRVQISQSPTAMA

Domain Annotation: Pfam

Other Sources:

Superfamily | TIGR Families | ProDom | iProClass | Prosite

Protein Properties:

Number of Residues Mol. Weight Avg. Hydropathy Score Charge pI Value

86 9585 0.056 1.0 7.7

ID: NYSGXRC-10353u Latest update: 2007-03-09 E Value: 0.69: view alignment

Lab: SGX Pharmaceuticals

Name: Q4QL22_HAEI8

Status: Selected, Cloned, Expressed, Soluble, Purified, Crystallized, Diffraction, Native diffraction-data, Phasing diffraction-data, In PDB

Database Reference: PDB: 3BGE BIG: BIG_278 UNIPROT: Q4QL22_HAEI8

Source Organism: Haemophilus influenzae

Sequence:

MSNLNFDFAENDFRPLAAKMRPTNLEQYFGQSHLIGEGKPLRKAIQAGHIHSMILWGPPGT

GKTTLAEIIAQRINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKS

QQDAFLPHIEDGTVIFIGATTENPSFELNNALLSRARVYVLKSLTTAEIEQVLQQAVEDP

ERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMADEMENGKKIDRTLLKEVLG

ERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASED

VGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAIIYLAVAPKSNAVYTAFNTAKQQAKD

LPDYDVPPHLRNAPTNLMKELGYGAEYRYAHDEPNAYAAGENYFPPELKDTQYYFPTNRG

MEIQIKEKLERLREQDKSTVKKRYK

Domain Annotation: Pfam

Other Sources:

Superfamily | TIGR Families | ProDom | iProClass | Prosite

Protein Properties:

Number of Residues Mol. Weight Avg. Hydropathy Score Charge pI Value

446 50278 -0.436 -1.0 6.3

ID: hsi002013839.1 Latest update: 2008-09-07 E Value: 0.9: view alignment

Lab: RSGI

Status: Selected, Cloned, Expressed, Soluble, Purified, NMR Assigned, HSQC, NMR Structure, In PDB

Database Reference: PDB: 2EEE

Source Organism: Homo sapiens

Sequence:

GSRITYVKGDLFACPKTDSLAHCISEDCRMGAGIAVLFKKKFGGVQELLNQQKKSGEVAVL

KRDGRYIYYLITKKRASHKPTYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWEN

VSAMIEEVFEATDIKITVYTL

Other Sources:

Protein Properties:

Number of Residues Mol. Weight Avg. Hydropathy Score Charge pI Value

142 15951 -0.273 7.5 9.2

ID: GO.36728 Latest update: 2008-01-14 E Value: 0.95: view alignment

Lab: CESG

Name: BC011709

Status: Selected, Expressed, Purified, NMR Assigned, HSQC, NMR Structure, In PDB, Other

Database Reference: PDB: 2JYC

Source Organism: Homo sapiens

Sequence:

MASSLNEDPEGSRITYVKGDLFACPKTDSLAHCISEDCRMGAGIAVLFKKKFGGVQELLNQ

QKKSGEVAVLKRDGRYIYYLITKKRASHKPTYENLQKSLEAMKSHCLKNGVTDLSMPRIG

CGLDRLQWENVSAMIEEVFEATDIKITVYTL

Other Sources:

Protein Properties:

Number of Residues Mol. Weight Avg. Hydropathy Score Charge pI Value

152 17025 -0.319 4.5 8.5

ID: NYSGXRC-10354e Latest update: 2008-03-19 E Value: 1.6: view alignment

Lab: SGX Pharmaceuticals

Name: Q7V3J8_PROMP

Status: Selected, Cloned, Expressed, Soluble, Purified, Crystallized, Diffraction, Native diffraction-data, Phasing diffraction-data, In PDB

Database Reference: PDB: 3CTD BIG: BIG_278 UNIPROT: Q7V3J8_PROMP

Source Organism: Prochlorococcus marinus

Sequence:

MESDNLFSNTYRIESNAPLADKLRPKNLDDFFGQESILGHDSLLRNAILNDKVGNIIFSGP

PGVGKTTLIEIISSNTRSSLIKLNAVLSSIKELRTEIANAKERLRSSNRKTILFIDEVHR

FTSVQQDALLPSIENGTITFIGATTENPFFAVNKALISRARIFSLLPLNKNDLKKIIDKV

IKYYSCLKDSKVVEIKEEAINHLIKFSGGDARNLINALELGISITKENKENLVVIDLAIA

EDSIQKKNIVYDKNGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLI

SACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLFFLSQASLYLAISPKSNSTKSIFKALE

AIKATNVSLVPNHLKNNASNYLNPHNYQGKWLQQEYLPTDLQGIKFWKPKDSGWEKNKYE

DLPKKQKS

Domain Annotation: Pfam

Other Sources:

Superfamily | TIGR Families | ProDom | iProClass | Prosite

Protein Properties:

Number of Residues Mol. Weight Avg. Hydropathy Score Charge pI Value

429 48010 -0.245 6.0 8.5

ID: SR1 Latest update: 2008-05-05 E Value: 1.9: view alignment

Lab: Northeast Structural Genomics Consortium

Name: Putative sigma L-dependent transcriptional regulator yplP.

Status: Selected, Cloned, Expressed, Soluble, Purified, HSQC, In PDB, Work Stopped

URL:

http://spine.nesg.org/target.cgi?id=SR1

Database Reference: PDB: 1XYZ MEGA: 1.10.8.60 MEGA: 3.40.50.300

Source Organism: Bacillus subtilis

Sequence:

MNSAPKLNTFQHLIGEHQTFLEAKRIAKQFSLSELPVLITGKIGTGKNHFAHAIHLESSRS

NEPFISVNCSTHSEETLIHELFGPNGNTGVFQKAVRGTLFLDDVWRMPASVQAQLLKALD

SDTEKPRMICASADRSVEHTFRQDLFYRLNILTLTLPELSERKSDIPLLTQHFLSNSGQQ

LLIDPSVFPVLEKHAFEGNVRELKNAADYMAAVSSGGTIQPYDLPPYIRGTIDGKTSKKK

AKLLTLMEKAEFLFILETIKVLNEKGEPASRRIISEHSKNTQTSLTPQQVRSRLDYLEKK

DYVTKSRGRAGTKITFEGLSFIETLKNQMI

Domain Annotation: Pfam

Other Sources:

Superfamily | TIGR Families | ProDom | iProClass | Prosite

Protein Properties:

Number of Residues Mol. Weight Avg. Hydropathy Score Charge pI Value

331 37210 -0.358 10.5 9.5

ID: APC90123.1 Latest update: 2007-03-01 E Value: 2.4: view alignment

Lab: Midwest Center for Structural Genomics

Name: PG0945

Status: Selected, Cloned, Expressed, Soluble, Purified, Crystallized, Diffraction-quality Crystals, Diffraction, Crystal Structure, In PDB

Remark:

ABC transporter, permease protein, putative (gi 34397011) ; targeted domain 44...183

Database Reference: PDB: 2P0S NCBI: AAQ66075.1 NCBI TAXONOMY DB: 242619

Source Organism: Porphyromonas gingivalis W83

Sequence:

QLGGDMKTIAIADRTGEYEQLFKENDEFRFVHAEKTAEEYRKMGADKSGIDAVLEIRQDLL

EDPNAVAIYGYKQLPASVSNHISRILSDYLSDKKIASYNIPDIKQILADSKIELSVHTYK

WSEDGTNERTSGELASGIS

Other Sources:

Protein Properties:

Number of Residues Mol. Weight Avg. Hydropathy Score Charge pI Value

140 15687 -0.571 -6.5 4.6

ID: NYSGXRC-10108a Latest update: 2006-10-13 E Value: 2.9: view alignment

Lab: SGX Pharmaceuticals

Name: PRPR_ECOLI

Status: Selected, Cloned, Expressed, Soluble, Purified, Crystallized, Diffraction, Native diffraction-data, Phasing diffraction-data, In PDB

Database Reference: PDB: 2PJU PFAM: PF06506 UNIPROT: P77743

Source Organism: Escherichia coli

Sequence:

MAHPPRLNDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANER

CDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVA

FQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAAT

VRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAA

VLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEG

AFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDV

RVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALS

APFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPE

LARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS

Domain Annotation: Pfam

Other Sources:

Superfamily | TIGR Families | ProDom | iProClass | Prosite

Protein Properties:

Number of Residues Mol. Weight Avg. Hydropathy Score Charge pI Value

528 58649 -0.135 7.5 8.4

ID: sto001002459.2 Latest update: 2008-09-07 E Value: 3.4: view alignment

Lab: RSGI

Status: Selected, Cloned, Expressed, Soluble, Purified, Crystallized, Diffraction-quality Crystals, Native diffraction-data, Phasing diffraction-data, Crystal Structure, In PDB

Database Reference: PDB: 2Z0M

Source Organism: Sulfolobus tokodaii

Sequence:

MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELGMKSLV

VTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWS

KGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDF

ITNYEEIEACIGLANVEHKFVHVKDDWRSKVQALRENKDKGVIVFVRTRNRVAKLVRLFD

NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYI

HRIGRTGRMGRKGEAITFILNEYWLEKEVKKVSQKA

Domain Annotation: Pfam

Other Sources:

Superfamily | TIGR Families | ProDom | iProClass | Prosite

Protein Properties:

Number of Residues Mol. Weight Avg. Hydropathy Score Charge pI Value

337 38342 -0.210 9.0 9.8

ID: ttk003000125.1 Latest update: 2008-09-07 E Value: 3.5: view alignment

Lab: RSGI

Status: Selected, Cloned, Expressed, Soluble, Purified, Crystallized, Diffraction-quality Crystals, Native diffraction-data, Phasing diffraction-data, Crystal Structure, In PDB

Database Reference: PDB: 2YWS

Source Organism: Thermus thermophilus

Sequence:

MKGMFTPGNGPVQISAEAIKKRVEELGGEIARDYQGKTPHLICVLNGAFIFMADLVRAIPL

PLTMDFIAISSYGNAFKSSGEVELLKDLRLPIHGRDVIVVEDIVDTGLTLSYLLDYLEAR

KPASVRVAALLSKPSRRQVEVPIHYLGFEIEDAYVYGYGLDRAQFDRNLPFITSIRPEEE

Domain Annotation: Pfam

Other Sources:

Superfamily | TIGR Families | ProDom | iProClass | Prosite

Protein Properties:

Number of Residues Mol. Weight Avg. Hydropathy Score Charge pI Value

181 20170 0.022 -3.5 5.1

ID: ttk003000125.3 Latest update: 2008-09-07 E Value: 3.5: view alignment

Lab: RSGI

Status: Selected, Cloned, Expressed, Soluble, Purified, Crystallized, Diffraction-quality Crystals, Native diffraction-data, Phasing diffraction-data, Crystal Structure, In PDB

Database Reference: PDB: 2YWU

Source Organism: Thermus thermophilus

Sequence:

MKGMFTPGNGPVQISAEAIKKRVEELGGEIARDYQGKTPHLICVLNGAFIFMADLVRAIPL

PLTMDFIAISSYGNAFKSSGEVELLKDLRLPIHGRDVIVVEDIVDTGLTLSYLLDYLEAR

KPASVRVAALLSKPSRRQVEVPIHYLGFEIEDAYVYGYGLDRAQFDRNLPFITSIRPEEE

Domain Annotation: Pfam

Other Sources:

Superfamily | TIGR Families | ProDom | iProClass | Prosite

Protein Properties:

Number of Residues Mol. Weight Avg. Hydropathy Score Charge pI Value

181 20170 0.022 -3.5 5.1

ID: ttk003000125.2 Latest update: 2008-09-07 E Value: 3.5: view alignment

Lab: RSGI

Status: Selected, Cloned, Expressed, Soluble, Purified, Crystallized, Diffraction-quality Crystals, Native diffraction-data, Phasing diffraction-data, Crystal Structure, In PDB

Database Reference: PDB: 2YWT

Source Organism: Thermus thermophilus

Sequence:

MKGMFTPGNGPVQISAEAIKKRVEELGGEIARDYQGKTPHLICVLNGAFIFMADLVRAIPL

PLTMDFIAISSYGNAFKSSGEVELLKDLRLPIHGRDVIVVEDIVDTGLTLSYLLDYLEAR

KPASVRVAALLSKPSRRQVEVPIHYLGFEIEDAYVYGYGLDRAQFDRNLPFITSIRPEEE

Domain Annotation: Pfam

Other Sources:

Superfamily | TIGR Families | ProDom | iProClass | Prosite

Protein Properties:

Number of Residues Mol. Weight Avg. Hydropathy Score Charge pI Value

181 20170 0.022 -3.5 5.1

ID: AtR62 Latest update: 2005-05-16 E Value: 4.7: view alignment

Lab: Northeast Structural Genomics Consortium

Name: Hypothetical protein Atu3015 (AGR_L_3574p).

Status: Selected, Cloned, Expressed, Soluble, Purified, Crystallized, Diffraction, HSQC, Crystal Structure, In PDB

URL:

http://spine.nesg.org/target.cgi?id=AtR62

Database Reference: PDB: 1ZP6 MEGA: 3.40.50.300

Source Organism: Agrobacterium tumefaciens

Sequence:

MNMTDDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQS

HQQNRMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIE

RCLDRGGDSLSDPLVVADLHSQFADLGAFEHHVLPVSGKDTDQALQSAINALQSGRFRID

AS

Other Sources:

Protein Properties:

Number of Residues Mol. Weight Avg. Hydropathy Score Charge pI Value

183 19929 -0.098 -1.5 6.2

ID: BSGCAIR31267 Latest update: 2006-08-16 E Value: 7.1: view alignment

Lab: Berkeley Structural Genomics Center

Status: Selected, Cloned, Expressed, Soluble, Purified, Crystallized, Diffraction-quality Crystals, Diffraction, Crystal Structure, In PDB

Database Reference: PDB: 2HQB

Source Organism: Bacillus halodurans

Sequence:

MVGLLVEDTIDDQGWNRKAYEGLLNIHSNLDVDVVLEEGVNSEQKAHRRIKELVDGGVNLI

FGHGHAFAEYFSTIHNQYPDVHFVSFNGEVKGENITSLHFEGYAMGYFGGMVAASMSETH

KVGVIAAFPWQPEVEGFVDGAKYMNESEAFVRYVGEWTDADKALELFQELQKEQVDVFYP

AGDGYHVPVVEAIKDQGDFAIGYVGDQADLGGSTILTSTVQHVDDLYVLVAKRFQEGKLE

SGNLYYDFQDGVVSLGEFSSVVPDEVREQITDAISTYIQTGQFPHEEER

Domain Annotation: Pfam

Other Sources:

Superfamily | TIGR Families | ProDom | iProClass | Prosite

Protein Properties:

Number of Residues Mol. Weight Avg. Hydropathy Score Charge pI Value

290 32294 -0.260 -26.5 4.2

ID: 356698 Latest update: 2004-11-04 E Value: 8.3: view alignment

Lab: JCSG

Status: Selected, Cloned, Expressed, Purified, Crystallized, Diffraction-quality Crystals, Diffraction, Crystal Structure, In PDB

Remark:

Accession:2649494 lacc:TB0541B Start:1 End:180;status_date::2008-10-01:3

Database Reference: PDB: 2ISB

Protein Name:

gi|11498698|ref|NP_069927.1| fumarase (fum-1) [Archaeoglobus fulgidus DSM 4304]

Source Organism: ARCHAEOGLOBUS FULGIDUS

Sequence:

MVMEYELRTPLVKDQILKLKVGDVVYITGEIFTARDEAHARALEWMEEGKELPFSFDKGVV

YHCGPLVKKNDEWRVVSAGPTTSARMNPFTPKILEKVECMGIIGKGGMSEEVVEAMRGKA

AYFAFTGGAGALAAMSIKKVKGVVWEDLGMPEAVWLLEVERFGPCIVAIDAHGNSLYRR

Database Reference: NCBI REFSEQ: NP_069927.1

Domain Annotation: Pfam

Other Sources:

Superfamily | TIGR Families | ProDom | iProClass | Prosite

Protein Properties:

Number of Residues Mol. Weight Avg. Hydropathy Score Charge pI Value

180 19926 -0.008 -0.5 6.3

ID: DR58 Center: NESGC

E-value: 0.00028 Identity: 19.737%

10 20 30

Query MKNVGDLMQRLQKMMPAHIKPAFKTGEELLAWQKEQGA

Q+ Q P++I +++ + + +

Subjct EVASFISQHHLSQEQINLSLSKFNQFLVERQKYQLKDPSYIAKGYQPILAMNEGYADVSY

40 50 60 70 80 90

Query IRSAALERENRAMKMQRTFNRSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEEF-DG

+++ L + ++ +++ ++ ++ +++ + + V+ ++M+A+S ++VE++ ++

Subjct LETKELVEAQKQAAISERIQLVSLPKSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSA

100 110 120 130 140 150

Query NIASFIFSGKPGTGKNHLAAAICNELLLR-GKSVLIITVADIMSAMKDTFRNSGTSEEQL

+ ++ + G G GK++L AA+ +EL + G S+ ++ ++ +K+++ N++++EE

Subjct EQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEE--

160 170 180 190 200

160 170 180 190 200 210

Query LNDLSNVDLLVIDEIGV-QTESKYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTK----

++ ++NV +L++D+IG+ Q+ S + +++ I++ R + PT + +N ++ ++ +

Subjct IDAVKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLERKWAT

210 220 230 240 250 260

220 230 240

Query LLG-------ERVMDRMRLGNSLWVIFNWDSYRSRVTGKEY

+ G +RVM+R+R

Subjct IKGSDETWQAKRVMERVRYLAREFHLEGANRR

270 280 290 300

</pre>

==Notes==

@@ Line 35: / Line 35: @@
 ==Gaps in the Template Model==
+<applet load='Dnac_from_2ggz_a.pdb' size='500' frame='true' align='right'
-The template was <scene name='User:Eric_Martz/Sandbox_4/2qgz/3'>2qgz</scene>. The portion of the template used was Glu107-Arg300. Only the amino-terminal 6 residues were not used as template (translucent). Note that there are <scene name='User:Eric_Martz/Sandbox_4/2qgz/5'>three loops</scene> in this segment of the template that lack coordinates due to [[disorder]] in the crystal (marked with spacefilled alpha-carbon atoms).
+scene='User:Eric_Martz/Sandbox_4/2qgz/3' />
+The template was 2QGZ (<scene name='User:Eric_Martz/Sandbox_4/2qgz/3'>initial scene</scene>). The portion of the template used was Glu107-Arg300. Only the amino-terminal 6 residues were not used as template (translucent). Note that there are <scene name='User:Eric_Martz/Sandbox_4/2qgz/5'>three loops</scene> in this segment of the template that lack coordinates due to [[disorder]] in the crystal (marked with spacefilled alpha-carbon atoms).
 The missing loops are 202-205 (NGSV), 226-231 (EQATSW), and 268-275 (TIKGSDET). These gaps, which occur between the residues marked /\ below, were apparently ignored in making the model, which has a continuous main chain.
-Below is the alignment produced by Swiss Model, used in making the 3D model. Vertical bars for identity were inserted by hand.
+Below is the alignment produced by Swiss Model, used in making the 3D model. Vertical bars for identity were inserted by hand (I may have missed some).
 <pre>
                                                   |     | |  |     ||
@@ Line 82: / Line 83: @@
 </pre>
 (Copied from Protein Explorer's sequence display.)
+Below is the alignment of dnaC with 2QGZ according to TargetDB (see above).
+<pre>
+Target Query Results
+There are 16 sequences that match your request.
+ID:  DR58    Latest update:  2007-09-21    E Value:  0.00028:  view alignment
+Lab:   Northeast Structural Genomics Consortium
+Name:   Putative primosome component (Helicase loader).
+Status:   Selected, Cloned, Expressed, Soluble, Purified, Crystallized, Diffraction, Crystal Structure, In PDB
+URL:
+http://spine.nesg.org/target.cgi?id=DR58
+Database Reference:     PDB: 2QGZ   PFAM: PF07319   MEGA: 3.40.50.300
+Source Organism:    Streptococcus pyogenes
+Sequence:
+MEKIGETMAKLGQNTRVNSDQLIQTILADPEVASFISQHHLSQEQINLSLSKFNQFLVERQ
+KYQLKDPSYIAKGYQPILAMNEGYADVSYLETKELVEAQKQAAISERIQLVSLPKSYRHI
+HLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKG
+VSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKNVPVLILDDIGAEQATSWVRDEVLQVIL
+QYRMLEELPTFFTSNYSFADLERKWATIKGSDETWQAKRVMERVRYLAREFHLEGANRR
+Domain Annotation:     Pfam
+Other Sources:
+Superfamily | TIGR Families | ProDom | iProClass | Prosite
+Protein Properties:
+Number of Residues 	Mol. Weight	Avg. Hydropathy Score	Charge	pI Value
+	34146	-0.321	-4.5	5.4
+ID:  hso002001071.2    Latest update:  2008-09-07    E Value:  0.14:  view alignment
+Lab:   RSGI
+Status:   Selected, Cloned, Expressed, Soluble, Purified, NMR Assigned, HSQC, NMR Structure, In PDB
+Database Reference:     PDB: 2EAO
+Source Organism:    Homo sapiens
+Sequence:
+SQPLLDRSIPDFTAFTTVDDWLSAIKMVQYRDSFLTAGFTSLQLVTQMTSEDLLRIGITLA
+GHQKKILNSIHSMRVQISQSPTAMA
+Domain Annotation:     Pfam
+Other Sources:
+Superfamily | TIGR Families | ProDom | iProClass | Prosite
+Protein Properties:
+Number of Residues 	Mol. Weight	Avg. Hydropathy Score	Charge	pI Value
+	9585	0.056	1.0	7.7
+ID:  NYSGXRC-10353u    Latest update:  2007-03-09    E Value:  0.69:  view alignment
+Lab:   SGX Pharmaceuticals
+Name:   Q4QL22_HAEI8
+Status:   Selected, Cloned, Expressed, Soluble, Purified, Crystallized, Diffraction, Native diffraction-data, Phasing diffraction-data, In PDB
+Database Reference:     PDB: 3BGE   BIG: BIG_278   UNIPROT: Q4QL22_HAEI8
+Source Organism:    Haemophilus influenzae
+Sequence:
+MSNLNFDFAENDFRPLAAKMRPTNLEQYFGQSHLIGEGKPLRKAIQAGHIHSMILWGPPGT
+GKTTLAEIIAQRINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKS
+QQDAFLPHIEDGTVIFIGATTENPSFELNNALLSRARVYVLKSLTTAEIEQVLQQAVEDP
+ERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMADEMENGKKIDRTLLKEVLG
+ERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASED
+VGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAIIYLAVAPKSNAVYTAFNTAKQQAKD
+LPDYDVPPHLRNAPTNLMKELGYGAEYRYAHDEPNAYAAGENYFPPELKDTQYYFPTNRG
+MEIQIKEKLERLREQDKSTVKKRYK
+Domain Annotation:     Pfam
+Other Sources:
+Superfamily | TIGR Families | ProDom | iProClass | Prosite
+Protein Properties:
+Number of Residues 	Mol. Weight	Avg. Hydropathy Score	Charge	pI Value
+	50278	-0.436	-1.0	6.3
+ID:  hsi002013839.1    Latest update:  2008-09-07    E Value:  0.9:  view alignment
+Lab:   RSGI
+Status:   Selected, Cloned, Expressed, Soluble, Purified, NMR Assigned, HSQC, NMR Structure, In PDB
+Database Reference:     PDB: 2EEE
+Source Organism:    Homo sapiens
+Sequence:
+GSRITYVKGDLFACPKTDSLAHCISEDCRMGAGIAVLFKKKFGGVQELLNQQKKSGEVAVL
+KRDGRYIYYLITKKRASHKPTYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWEN
+VSAMIEEVFEATDIKITVYTL
+Other Sources:
+Pfam |  Superfamily | TIGR Families | ProDom | iProClass | Prosite
+Protein Properties:
+Number of Residues 	Mol. Weight	Avg. Hydropathy Score	Charge	pI Value
+	15951	-0.273	7.5	9.2
+ID:  GO.36728    Latest update:  2008-01-14    E Value:  0.95:  view alignment
+Lab:   CESG
+Name:   BC011709
+Status:   Selected, Expressed, Purified, NMR Assigned, HSQC, NMR Structure, In PDB, Other
+Database Reference:     PDB: 2JYC
+Source Organism:    Homo sapiens
+Sequence:
+MASSLNEDPEGSRITYVKGDLFACPKTDSLAHCISEDCRMGAGIAVLFKKKFGGVQELLNQ
+QKKSGEVAVLKRDGRYIYYLITKKRASHKPTYENLQKSLEAMKSHCLKNGVTDLSMPRIG
+CGLDRLQWENVSAMIEEVFEATDIKITVYTL
+Other Sources:
+Pfam |  Superfamily | TIGR Families | ProDom | iProClass | Prosite
+Protein Properties:
+Number of Residues 	Mol. Weight	Avg. Hydropathy Score	Charge	pI Value
+	17025	-0.319	4.5	8.5
+ID:  NYSGXRC-10354e    Latest update:  2008-03-19    E Value:  1.6:  view alignment
+Lab:   SGX Pharmaceuticals
+Name:   Q7V3J8_PROMP
+Status:   Selected, Cloned, Expressed, Soluble, Purified, Crystallized, Diffraction, Native diffraction-data, Phasing diffraction-data, In PDB
+Database Reference:     PDB: 3CTD   BIG: BIG_278   UNIPROT: Q7V3J8_PROMP
+Source Organism:    Prochlorococcus marinus
+Sequence:
+MESDNLFSNTYRIESNAPLADKLRPKNLDDFFGQESILGHDSLLRNAILNDKVGNIIFSGP
+PGVGKTTLIEIISSNTRSSLIKLNAVLSSIKELRTEIANAKERLRSSNRKTILFIDEVHR
+FTSVQQDALLPSIENGTITFIGATTENPFFAVNKALISRARIFSLLPLNKNDLKKIIDKV
+IKYYSCLKDSKVVEIKEEAINHLIKFSGGDARNLINALELGISITKENKENLVVIDLAIA
+EDSIQKKNIVYDKNGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLI
+SACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLFFLSQASLYLAISPKSNSTKSIFKALE
+AIKATNVSLVPNHLKNNASNYLNPHNYQGKWLQQEYLPTDLQGIKFWKPKDSGWEKNKYE
+DLPKKQKS
+Domain Annotation:     Pfam
+Other Sources:
+Superfamily | TIGR Families | ProDom | iProClass | Prosite
+Protein Properties:
+Number of Residues 	Mol. Weight	Avg. Hydropathy Score	Charge	pI Value
+	48010	-0.245	6.0	8.5
+ID:  SR1    Latest update:  2008-05-05    E Value:  1.9:  view alignment
+Lab:   Northeast Structural Genomics Consortium
+Name:   Putative sigma L-dependent transcriptional regulator yplP.
+Status:   Selected, Cloned, Expressed, Soluble, Purified, HSQC, In PDB, Work Stopped
+URL:
+http://spine.nesg.org/target.cgi?id=SR1
+Database Reference:     PDB: 1XYZ   MEGA: 1.10.8.60   MEGA: 3.40.50.300
+Source Organism:    Bacillus subtilis
+Sequence:
+MNSAPKLNTFQHLIGEHQTFLEAKRIAKQFSLSELPVLITGKIGTGKNHFAHAIHLESSRS
+NEPFISVNCSTHSEETLIHELFGPNGNTGVFQKAVRGTLFLDDVWRMPASVQAQLLKALD
+SDTEKPRMICASADRSVEHTFRQDLFYRLNILTLTLPELSERKSDIPLLTQHFLSNSGQQ
+LLIDPSVFPVLEKHAFEGNVRELKNAADYMAAVSSGGTIQPYDLPPYIRGTIDGKTSKKK
+AKLLTLMEKAEFLFILETIKVLNEKGEPASRRIISEHSKNTQTSLTPQQVRSRLDYLEKK
+DYVTKSRGRAGTKITFEGLSFIETLKNQMI
+Domain Annotation:     Pfam
+Other Sources:
+Superfamily | TIGR Families | ProDom | iProClass | Prosite
+Protein Properties:
+Number of Residues 	Mol. Weight	Avg. Hydropathy Score	Charge	pI Value
+	37210	-0.358	10.5	9.5
+ID:  APC90123.1    Latest update:  2007-03-01    E Value:  2.4:  view alignment
+Lab:   Midwest Center for Structural Genomics
+Name:   PG0945
+Status:   Selected, Cloned, Expressed, Soluble, Purified, Crystallized, Diffraction-quality Crystals, Diffraction, Crystal Structure, In PDB
+Remark:
+ABC transporter, permease protein, putative (gi 34397011) ; targeted domain 44...183
+Database Reference:     PDB: 2P0S   NCBI: AAQ66075.1   NCBI TAXONOMY DB: 242619
+Source Organism:    Porphyromonas gingivalis W83
+Sequence:
+QLGGDMKTIAIADRTGEYEQLFKENDEFRFVHAEKTAEEYRKMGADKSGIDAVLEIRQDLL
+EDPNAVAIYGYKQLPASVSNHISRILSDYLSDKKIASYNIPDIKQILADSKIELSVHTYK
+WSEDGTNERTSGELASGIS
+Other Sources:
+Pfam |  Superfamily | TIGR Families | ProDom | iProClass | Prosite
+Protein Properties:
+Number of Residues 	Mol. Weight	Avg. Hydropathy Score	Charge	pI Value
+	15687	-0.571	-6.5	4.6
+ID:  NYSGXRC-10108a    Latest update:  2006-10-13    E Value:  2.9:  view alignment
+Lab:   SGX Pharmaceuticals
+Name:   PRPR_ECOLI
+Status:   Selected, Cloned, Expressed, Soluble, Purified, Crystallized, Diffraction, Native diffraction-data, Phasing diffraction-data, In PDB
+Database Reference:     PDB: 2PJU   PFAM: PF06506   UNIPROT: P77743
+Source Organism:    Escherichia coli
+Sequence:
+MAHPPRLNDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANER
+CDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVA
+FQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAAT
+VRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAA
+VLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEG
+AFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDV
+RVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALS
+APFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPE
+LARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS
+Domain Annotation:     Pfam
+Other Sources:
+Superfamily | TIGR Families | ProDom | iProClass | Prosite
+Protein Properties:
+Number of Residues 	Mol. Weight	Avg. Hydropathy Score	Charge	pI Value
+	58649	-0.135	7.5	8.4
+ID:  sto001002459.2    Latest update:  2008-09-07    E Value:  3.4:  view alignment
+Lab:   RSGI
+Status:   Selected, Cloned, Expressed, Soluble, Purified, Crystallized, Diffraction-quality Crystals, Native diffraction-data, Phasing diffraction-data, Crystal Structure, In PDB
+Database Reference:     PDB: 2Z0M
+Source Organism:    Sulfolobus tokodaii
+Sequence:
+MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELGMKSLV
+VTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWS
+KGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDF
+ITNYEEIEACIGLANVEHKFVHVKDDWRSKVQALRENKDKGVIVFVRTRNRVAKLVRLFD
+NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYI
+HRIGRTGRMGRKGEAITFILNEYWLEKEVKKVSQKA
+Domain Annotation:     Pfam
+Other Sources:
+Superfamily | TIGR Families | ProDom | iProClass | Prosite
+Protein Properties:
+Number of Residues 	Mol. Weight	Avg. Hydropathy Score	Charge	pI Value
+	38342	-0.210	9.0	9.8
+ID:  ttk003000125.1    Latest update:  2008-09-07    E Value:  3.5:  view alignment
+Lab:   RSGI
+Status:   Selected, Cloned, Expressed, Soluble, Purified, Crystallized, Diffraction-quality Crystals, Native diffraction-data, Phasing diffraction-data, Crystal Structure, In PDB
+Database Reference:     PDB: 2YWS
+Source Organism:    Thermus thermophilus
+Sequence:
+MKGMFTPGNGPVQISAEAIKKRVEELGGEIARDYQGKTPHLICVLNGAFIFMADLVRAIPL
+PLTMDFIAISSYGNAFKSSGEVELLKDLRLPIHGRDVIVVEDIVDTGLTLSYLLDYLEAR
+KPASVRVAALLSKPSRRQVEVPIHYLGFEIEDAYVYGYGLDRAQFDRNLPFITSIRPEEE
+Domain Annotation:     Pfam
+Other Sources:
+Superfamily | TIGR Families | ProDom | iProClass | Prosite
+Protein Properties:
+Number of Residues 	Mol. Weight	Avg. Hydropathy Score	Charge	pI Value
+	20170	0.022	-3.5	5.1
+ID:  ttk003000125.3    Latest update:  2008-09-07    E Value:  3.5:  view alignment
+Lab:   RSGI
+Status:   Selected, Cloned, Expressed, Soluble, Purified, Crystallized, Diffraction-quality Crystals, Native diffraction-data, Phasing diffraction-data, Crystal Structure, In PDB
+Database Reference:     PDB: 2YWU
+Source Organism:    Thermus thermophilus
+Sequence:
+MKGMFTPGNGPVQISAEAIKKRVEELGGEIARDYQGKTPHLICVLNGAFIFMADLVRAIPL
+PLTMDFIAISSYGNAFKSSGEVELLKDLRLPIHGRDVIVVEDIVDTGLTLSYLLDYLEAR
+KPASVRVAALLSKPSRRQVEVPIHYLGFEIEDAYVYGYGLDRAQFDRNLPFITSIRPEEE
+Domain Annotation:     Pfam
+Other Sources:
+Superfamily | TIGR Families | ProDom | iProClass | Prosite
+Protein Properties:
+Number of Residues 	Mol. Weight	Avg. Hydropathy Score	Charge	pI Value
+	20170	0.022	-3.5	5.1
+ID:  ttk003000125.2    Latest update:  2008-09-07    E Value:  3.5:  view alignment
+Lab:   RSGI
+Status:   Selected, Cloned, Expressed, Soluble, Purified, Crystallized, Diffraction-quality Crystals, Native diffraction-data, Phasing diffraction-data, Crystal Structure, In PDB
+Database Reference:     PDB: 2YWT
+Source Organism:    Thermus thermophilus
+Sequence:
+MKGMFTPGNGPVQISAEAIKKRVEELGGEIARDYQGKTPHLICVLNGAFIFMADLVRAIPL
+PLTMDFIAISSYGNAFKSSGEVELLKDLRLPIHGRDVIVVEDIVDTGLTLSYLLDYLEAR
+KPASVRVAALLSKPSRRQVEVPIHYLGFEIEDAYVYGYGLDRAQFDRNLPFITSIRPEEE
+Domain Annotation:     Pfam
+Other Sources:
+Superfamily | TIGR Families | ProDom | iProClass | Prosite
+Protein Properties:
+Number of Residues 	Mol. Weight	Avg. Hydropathy Score	Charge	pI Value
+	20170	0.022	-3.5	5.1
+ID:  AtR62    Latest update:  2005-05-16    E Value:  4.7:  view alignment
+Lab:   Northeast Structural Genomics Consortium
+Name:   Hypothetical protein Atu3015 (AGR_L_3574p).
+Status:   Selected, Cloned, Expressed, Soluble, Purified, Crystallized, Diffraction, HSQC, Crystal Structure, In PDB
+URL:
+http://spine.nesg.org/target.cgi?id=AtR62
+Database Reference:     PDB: 1ZP6   MEGA: 3.40.50.300
+Source Organism:    Agrobacterium tumefaciens
+Sequence:
+MNMTDDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQS
+HQQNRMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIE
+RCLDRGGDSLSDPLVVADLHSQFADLGAFEHHVLPVSGKDTDQALQSAINALQSGRFRID
+AS
+Other Sources:
+Pfam |  Superfamily | TIGR Families | ProDom | iProClass | Prosite
+Protein Properties:
+Number of Residues 	Mol. Weight	Avg. Hydropathy Score	Charge	pI Value
+	19929	-0.098	-1.5	6.2
+ID:  BSGCAIR31267    Latest update:  2006-08-16    E Value:  7.1:  view alignment
+Lab:   Berkeley Structural Genomics Center
+Status:   Selected, Cloned, Expressed, Soluble, Purified, Crystallized, Diffraction-quality Crystals, Diffraction, Crystal Structure, In PDB
+Database Reference:     PDB: 2HQB
+Source Organism:    Bacillus halodurans
+Sequence:
+MVGLLVEDTIDDQGWNRKAYEGLLNIHSNLDVDVVLEEGVNSEQKAHRRIKELVDGGVNLI
+FGHGHAFAEYFSTIHNQYPDVHFVSFNGEVKGENITSLHFEGYAMGYFGGMVAASMSETH
+KVGVIAAFPWQPEVEGFVDGAKYMNESEAFVRYVGEWTDADKALELFQELQKEQVDVFYP
+AGDGYHVPVVEAIKDQGDFAIGYVGDQADLGGSTILTSTVQHVDDLYVLVAKRFQEGKLE
+SGNLYYDFQDGVVSLGEFSSVVPDEVREQITDAISTYIQTGQFPHEEER
+Domain Annotation:     Pfam
+Other Sources:
+Superfamily | TIGR Families | ProDom | iProClass | Prosite
+Protein Properties:
+Number of Residues 	Mol. Weight	Avg. Hydropathy Score	Charge	pI Value
+	32294	-0.260	-26.5	4.2
+ID:  356698    Latest update:  2004-11-04    E Value:  8.3:  view alignment
+Lab:   JCSG
+Status:   Selected, Cloned, Expressed, Purified, Crystallized, Diffraction-quality Crystals, Diffraction, Crystal Structure, In PDB
+Remark:
+Accession:2649494 lacc:TB0541B Start:1 End:180;status_date::2008-10-01:3
+Database Reference:     PDB: 2ISB
+Protein Name:
+gi|11498698|ref|NP_069927.1| fumarase (fum-1) [Archaeoglobus fulgidus DSM 4304]
+Source Organism:    ARCHAEOGLOBUS FULGIDUS
+Sequence:
+MVMEYELRTPLVKDQILKLKVGDVVYITGEIFTARDEAHARALEWMEEGKELPFSFDKGVV
+YHCGPLVKKNDEWRVVSAGPTTSARMNPFTPKILEKVECMGIIGKGGMSEEVVEAMRGKA
+AYFAFTGGAGALAAMSIKKVKGVVWEDLGMPEAVWLLEVERFGPCIVAIDAHGNSLYRR
+Database Reference:     NCBI REFSEQ: NP_069927.1
+Domain Annotation:     Pfam
+Other Sources:
+Superfamily | TIGR Families | ProDom | iProClass | Prosite
+Protein Properties:
+Number of Residues 	Mol. Weight	Avg. Hydropathy Score	Charge	pI Value
+	19926	-0.008	-0.5	6.3
+ ID:   DR58   Center: NESGC
+E-value: 0.00028  Identity: 19.737%
+        20        30
+Query                        MKNVGDLMQRLQKMMPAHIKPAFKTGEELLAWQKEQGA
+                                     Q+ Q   P++I  +++    +     + +
+Subjct EVASFISQHHLSQEQINLSLSKFNQFLVERQKYQLKDPSYIAKGYQPILAMNEGYADVSY
+        50        60        70        80        90
+        50        60        70        80        90
+Query  IRSAALERENRAMKMQRTFNRSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEEF-DG
+       +++  L + ++   +++ ++  ++   +++  + +  V+  ++M+A+S   ++VE++ ++
+Subjct LETKELVEAQKQAAISERIQLVSLPKSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSA
+       110       120       130       140       150
+       110       120        130       140       150
+Query  NIASFIFSGKPGTGKNHLAAAICNELLLR-GKSVLIITVADIMSAMKDTFRNSGTSEEQL
+       +  ++ + G  G GK++L AA+ +EL  + G S+ ++   ++   +K+++ N++++EE
+Subjct EQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEE--
+       170       180       190       200
+       170        180       190       200       210
+Query  LNDLSNVDLLVIDEIGV-QTESKYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTK----
+       ++ ++NV +L++D+IG+ Q+ S  +  +++ I++ R   + PT + +N ++ ++ +
+Subjct IDAVKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLERKWAT
+       220       230       240       250       260
+       230       240
+Query  LLG-------ERVMDRMRLGNSLWVIFNWDSYRSRVTGKEY
+       + G       +RVM+R+R
+Subjct IKGSDETWQAKRVMERVRYLAREFHLEGANRR
+       280       290       300
+</pre>
 ==Notes==
 <references />