User:Eric Martz/Cavities tests: Difference between revisions

Line 1:

<applet load='Dnac_from_2ggz_a.pdb' size='500' frame='true' align='right~~' caption='~~'

<applet load='Dnac_from_2ggz_a.pdb' size='500' frame='true' align='right'

scene='User:Eric_Martz/Sandbox_4/Dnac_model_from_2ggz_a/1' />

scene='User:Eric_Martz/Sandbox_4/Dnac_model_from_2ggz_a/3' />

The following sequence was provided for DnaC from E. coli:

Line 12:

</pre>

This sequence was submitted to Swiss Model, which [http://tinyurl.com/4nek2q generated the homology model] shown here (<scene name='User:Eric_Martz/Sandbox_4/Dnac_model_from_2ggz_a/2'>restore initial scene</scene>) using [[2qgz]] chain A as a template, which has 18.6% sequence identity.

This sequence was submitted to Swiss Model, which [http://tinyurl.com/4nek2q generated the homology model] shown here (<scene name='User:Eric_Martz/Sandbox_4/Dnac_model_from_2ggz_a/3'>restore initial scene</scene>) using [[2qgz]] chain A as a template, which has 18.6% sequence identity.

In order to find specific residues, or see other aspects of this homology model, please use:

Line 18:

[http://firstglance.jmol.org/fg.htm?mol=http%3A//proteopedia.org/wiki/images/3/3e/Dnac_from_2ggz_a.pdb View DnaC Homology Model in FirstGlance in Jmol]

The template was <scene name='User:Eric_Martz/Sandbox_4/2qgz/1'>2qgz</scene>. The portion of the template used was Glu107-Arg300. Only the amino-terminal 6 residues were not used as template (translucent). Note that there are <scene name='User:Eric_Martz/Sandbox_4/2qgz/2'>three loops</scene> in this segment of the template that lack coordinates due to [[disorder]] in the crystal (marked with spacefilled alpha-carbon atoms).

The template was <scene name='User:Eric_Martz/Sandbox_4/2qgz/3'>2qgz</scene>. The portion of the template used was Glu107-Arg300. Only the amino-terminal 6 residues were not used as template (translucent). Note that there are <scene name='User:Eric_Martz/Sandbox_4/2qgz/5'>three loops</scene> in this segment of the template that lack coordinates due to [[disorder]] in the crystal (marked with spacefilled alpha-carbon atoms).

@@ Line 1: / Line 1: @@
-<applet load='Dnac_from_2ggz_a.pdb' size='500' frame='true' align='right' caption=''
+<applet load='Dnac_from_2ggz_a.pdb' size='500' frame='true' align='right'
-scene='User:Eric_Martz/Sandbox_4/Dnac_model_from_2ggz_a/1' />
+scene='User:Eric_Martz/Sandbox_4/Dnac_model_from_2ggz_a/3' />
 The following sequence was provided for DnaC from E. coli:
@@ Line 12: / Line 12: @@
 </pre>
-This sequence was submitted to Swiss Model, which [http://tinyurl.com/4nek2q generated the homology model] shown here (<scene name='User:Eric_Martz/Sandbox_4/Dnac_model_from_2ggz_a/2'>restore initial scene</scene>) using [[2qgz]] chain A as a template, which has 18.6% sequence identity.
+This sequence was submitted to Swiss Model, which [http://tinyurl.com/4nek2q generated the homology model] shown here (<scene name='User:Eric_Martz/Sandbox_4/Dnac_model_from_2ggz_a/3'>restore initial scene</scene>) using [[2qgz]] chain A as a template, which has 18.6% sequence identity.
 In order to find specific residues, or see other aspects of this homology model, please use:
@@ Line 18: / Line 18: @@
 [http://firstglance.jmol.org/fg.htm?mol=http%3A//proteopedia.org/wiki/images/3/3e/Dnac_from_2ggz_a.pdb View DnaC Homology Model in FirstGlance in Jmol]
-The template was <scene name='User:Eric_Martz/Sandbox_4/2qgz/1'>2qgz</scene>. The portion of the template used was Glu107-Arg300. Only the amino-terminal 6 residues were not used as template (translucent). Note that there are <scene name='User:Eric_Martz/Sandbox_4/2qgz/2'>three loops</scene> in this segment of the template that lack coordinates due to [[disorder]] in the crystal (marked with spacefilled alpha-carbon atoms).
+The template was <scene name='User:Eric_Martz/Sandbox_4/2qgz/3'>2qgz</scene>. The portion of the template used was Glu107-Arg300. Only the amino-terminal 6 residues were not used as template (translucent). Note that there are <scene name='User:Eric_Martz/Sandbox_4/2qgz/5'>three loops</scene> in this segment of the template that lack coordinates due to [[disorder]] in the crystal (marked with spacefilled alpha-carbon atoms).