1ryq: Difference between revisions

Revision as of 13:18, 28 July 2008

This article has been automatically seeded. Changes to this page should pertain to the PDB entry only and not to the protein or biomolecule in general.

File:1ryq.png

Template:STRUCTURE 1ryq

Putative DNA-directed RNA polymerase, subunit e from Pyrococcus Furiosus Pfu-263306-001Putative DNA-directed RNA polymerase, subunit e from Pyrococcus Furiosus Pfu-263306-001

Template:ABSTRACT PUBMED 15858261

About this StructureAbout this Structure

1RYQ is a Single protein structure of sequence from Pyrococcus furiosus. Full crystallographic information is available from OCA.

ReferenceReference

Parameter-space screening: a powerful tool for high-throughput crystal structure determination., Liu ZJ, Lin D, Tempel W, Praissman JL, Rose JP, Wang BC, Acta Crystallogr D Biol Crystallogr. 2005 May;61(Pt 5):520-7. Epub 2005, Apr 20. PMID:15858261

The high-throughput protein-to-structure pipeline at SECSG., Liu ZJ, Tempel W, Ng JD, Lin D, Shah AK, Chen L, Horanyi PS, Habel JE, Kataeva IA, Xu H, Yang H, Chang JC, Huang L, Chang SH, Zhou W, Lee D, Praissman JL, Zhang H, Newton MG, Rose JP, Richardson JS, Richardson DC, Wang BC, Acta Crystallogr D Biol Crystallogr. 2005 Jun;61(Pt 6):679-84. Epub 2005, May 26. PMID:15930619

Page seeded by OCA on Mon Jul 28 13:18:45 2008

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-[[Image:1ryq.jpg|left|200px]]
+{{Seed}}
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 {{STRUCTURE_1ryq|  PDB=1ryq  |  SCENE=  }}
-'''Putative DNA-directed RNA polymerase, subunit e'' from Pyrococcus Furiosus Pfu-263306-001'''
+===Putative DNA-directed RNA polymerase, subunit e'' from Pyrococcus Furiosus Pfu-263306-001===
-==Overview==
+<!--
-The determination of protein structures on a genomic scale requires both computing capacity and efficiency increases at many stages along the complex process. By combining bioinformatics workflow-management techniques, cluster-based computing and popular crystallographic structure-determination software packages, an efficient and powerful new tool for structural biology/genomics has been developed. Using the workflow manager and a simple web interface, the researcher can, in a few easy steps, set up hundreds of structure-determination jobs, each using a slightly different set of program input parameters, thus efficiently screening parameter space for the optimal input-parameter combination, i.e. a set of parameters that leads to a successful structure determination. Upon completion, results from the programs are harvested, analyzed, sorted based on success and presented to the user via the web interface. This approach has been applied with success in more than 30 cases. Examples of successful structure determinations based on single-wavelength scattering (SAS) are described and include cases where the 'rational' crystallographer-based selection of input parameters values had failed.
+The line below this paragraph, {{ABSTRACT_PUBMED_15858261}}, adds the Publication Abstract to the page
+(as it appears on PubMed at http://www.pubmed.gov), where 15858261 is the PubMed ID number.
+-->
+{{ABSTRACT_PUBMED_15858261}}
 ==About this Structure==
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 ==Reference==
 Parameter-space screening: a powerful tool for high-throughput crystal structure determination., Liu ZJ, Lin D, Tempel W, Praissman JL, Rose JP, Wang BC, Acta Crystallogr D Biol Crystallogr. 2005 May;61(Pt 5):520-7. Epub 2005, Apr 20. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15858261 15858261]
+The high-throughput protein-to-structure pipeline at SECSG., Liu ZJ, Tempel W, Ng JD, Lin D, Shah AK, Chen L, Horanyi PS, Habel JE, Kataeva IA, Xu H, Yang H, Chang JC, Huang L, Chang SH, Zhou W, Lee D, Praissman JL, Zhang H, Newton MG, Rose JP, Richardson JS, Richardson DC, Wang BC, Acta Crystallogr D Biol Crystallogr. 2005 Jun;61(Pt 6):679-84. Epub 2005, May 26. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15930619 15930619]
 [[Category: Pyrococcus furiosus]]
 [[Category: Single protein]]
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 [[Category: Structural genomic]]
 [[Category: Zinc]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May  3 08:04:30 2008''
+''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 13:18:45 2008''