1j9m: Difference between revisions

Revision as of 14:44, 1 July 2008

This article has been automatically seeded. Changes to this page should pertain to the PDB entry only and not to the protein or biomolecule in general.

File:1j9m.png

Template:STRUCTURE 1j9m

K38H mutant of Streptomyces K15 DD-transpeptidaseK38H mutant of Streptomyces K15 DD-transpeptidase

Template:ABSTRACT PUBMED 12627955

About this StructureAbout this Structure

1J9M is a Single protein structure of sequence from Streptomyces sp.. This structure supersedes the now removed PDB entry 1eqs. Full crystallographic information is available from OCA.

ReferenceReference

Catalytic mechanism of the Streptomyces K15 DD-transpeptidase/penicillin-binding protein probed by site-directed mutagenesis and structural analysis., Rhazi N, Charlier P, Dehareng D, Engher D, Vermeire M, Frere JM, Nguyen-Disteche M, Fonze E, Biochemistry. 2003 Mar 18;42(10):2895-906. PMID:12627955

Page seeded by OCA on Tue Jul 1 14:44:00 2008

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OCA

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-[[Image:1j9m.jpg|left|200px]]
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-'''K38H mutant of Streptomyces K15 DD-transpeptidase'''
+===K38H mutant of Streptomyces K15 DD-transpeptidase===
-==Overview==
+<!--
-The Streptomyces K15 penicillin-binding DD-transpeptidase is presumed to be involved in peptide cross-linking during bacterial cell wall peptidoglycan assembly. To gain insight into the catalytic mechanism, the roles of residues Lys38, Ser96, and Cys98, belonging to the structural elements defining the active site cleft, have been investigated by site-directed mutagenesis, biochemical studies, and X-ray diffraction analysis. The Lys38His and Ser96Ala mutations almost completely abolished the penicillin binding and severely impaired the transpeptidase activities while the geometry of the active site was essentially the same as in the wild-type enzyme. It is proposed that Lys38 acts as the catalytic base that abstracts a proton from the active serine Ser35 during nucleophilic attack and that Ser96 is a key intermediate in the proton transfer from the Ogamma of Ser35 to the substrate leaving group nitrogen. The role of these two residues should be conserved among penicillin-binding proteins containing the Ser-Xaa-Asn/Cys sequence in motif 2. Conversion of Cys98 into Asn decreased the transpeptidase activity and increased hydrolysis of the thiolester substrate and the acylation rate with most beta-lactam antibiotics. Cys98 is proposed to play the same role as Asn in motif 2 of other penicilloyl serine transferases in properly positioning the substrate for the catalytic process.
+The line below this paragraph, {{ABSTRACT_PUBMED_12627955}}, adds the Publication Abstract to the page
+(as it appears on PubMed at http://www.pubmed.gov), where 12627955 is the PubMed ID number.
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+{{ABSTRACT_PUBMED_12627955}}
 ==About this Structure==
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 [[Category: Penicillin-binding]]
 [[Category: Serine peptidase]]
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