1d4i: Difference between revisions

Revision as of 22:23, 30 June 2008

This article has been automatically seeded. Changes to this page should pertain to the PDB entry only and not to the protein or biomolecule in general.

File:1d4i.png

Template:STRUCTURE 1d4i

HIV-1 protease in complex with the inhibitor BEA425HIV-1 protease in complex with the inhibitor BEA425

Template:ABSTRACT PUBMED 12694187

About this StructureAbout this Structure

1D4I is a Single protein structure of sequence from Human immunodeficiency virus. Full crystallographic information is available from OCA.

ReferenceReference

Optimization of P1-P3 groups in symmetric and asymmetric HIV-1 protease inhibitors., Andersson HO, Fridborg K, Lowgren S, Alterman M, Muhlman A, Bjorsne M, Garg N, Kvarnstrom I, Schaal W, Classon B, Karlen A, Danielsson UH, Ahlsen G, Nillroth U, Vrang L, Oberg B, Samuelsson B, Hallberg A, Unge T, Eur J Biochem. 2003 Apr;270(8):1746-58. PMID:12694187

Page seeded by OCA on Mon Jun 30 22:23:49 2008

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:1d4i.jpg|left|200px]]
+{{Seed}}
+[[Image:1d4i.png|left|200px]]
 <!--
@@ Line 9: / Line 10: @@
 {{STRUCTURE_1d4i|  PDB=1d4i  |  SCENE=  }}
-'''HIV-1 protease in complex with the inhibitor BEA425'''
+===HIV-1 protease in complex with the inhibitor BEA425===
-==Overview==
+<!--
-HIV-1 protease is an important target for treatment of AIDS, and efficient drugs have been developed. However, the resistance and negative side effects of the current drugs has necessitated the development of new compounds with different binding patterns. In this study, nine C-terminally duplicated HIV-1 protease inhibitors were cocrystallised with the enzyme, the crystal structures analysed at 1.8-2.3 A resolution, and the inhibitory activity of the compounds characterized in order to evaluate the effects of the individual modifications. These compounds comprise two central hydroxy groups that mimic the geminal hydroxy groups of a cleavage-reaction intermediate. One of the hydroxy groups is located between the delta-oxygen atoms of the two catalytic aspartic acid residues, and the other in the gauche position relative to the first. The asymmetric binding of the two central inhibitory hydroxyls induced a small deviation from exact C2 symmetry in the whole enzyme-inhibitor complex. The study shows that the protease molecule could accommodate its structure to different sizes of the P2/P2' groups. The structural alterations were, however, relatively conservative and limited. The binding capacity of the S3/S3' sites was exploited by elongation of the compounds with groups in the P3/P3' positions or by extension of the P1/P1' groups. Furthermore, water molecules were shown to be important binding links between the protease and the inhibitors. This study produced a number of inhibitors with Ki values in the 100 picomolar range.
+The line below this paragraph, {{ABSTRACT_PUBMED_12694187}}, adds the Publication Abstract to the page
+(as it appears on PubMed at http://www.pubmed.gov), where 12694187 is the PubMed ID number.
+-->
+{{ABSTRACT_PUBMED_12694187}}
 ==About this Structure==
@@ Line 26: / Line 30: @@
 [[Category: Dimer]]
 [[Category: Hydrolase]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri May  2 13:26:33 2008''
+''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jun 30 22:23:49 2008''