NMR Ensembles of Models: Difference between revisions
Eric Martz (talk | contribs) →Display of NMR Models by Proteopedia: polishing |
Eric Martz (talk | contribs) →Display of NMR Models by Proteopedia: polishing |
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<center><table cellpadding="5" cellspacing="0"><tr> <td bgcolor="#0000ff"><font color="#ffffff" face="sans-serif"><b>N, 5'</b></font></td> <td bgcolor="#00c0ff"> </td> <td bgcolor="#00e0b0"> </td> <td bgcolor="#50e000"> </td> <td bgcolor="#a0e000"> </td> <td bgcolor="#e0e000"> </td> <td bgcolor="#ffa000"> </td> <td bgcolor="#ff0000"><font color="#ffffff" face="sans-serif"><b>C, 3'</b></font></td> </tr></table></center> | <center><table cellpadding="5" cellspacing="0"><tr> <td bgcolor="#0000ff"><font color="#ffffff" face="sans-serif"><b>N, 5'</b></font></td> <td bgcolor="#00c0ff"> </td> <td bgcolor="#00e0b0"> </td> <td bgcolor="#50e000"> </td> <td bgcolor="#a0e000"> </td> <td bgcolor="#e0e000"> </td> <td bgcolor="#ffa000"> </td> <td bgcolor="#ff0000"><font color="#ffffff" face="sans-serif"><b>C, 3'</b></font></td> </tr></table></center> | ||
Ligands ([[Hetero atoms]]) are also shown for all models, except that they are opaque only for model 1, and translucent for all other models. Ligand atoms are colored by element, using the [[CPK color scheme]]. | Ligands ([[Hetero atoms]]) are also shown for all models, except that they are opaque only for model 1, and translucent for all other models. Ligand atoms are colored by element, using the [[CPK color scheme]]. | ||
The example at right shows the 3 models for [[1lcd]], a lac repressor domain bound to DNA, with one sodium ion. Water is present in this model but for clarity, Proteopedia does not show water in its initial scene. | The example at right shows the 3 models for [[1lcd]], a lac repressor domain bound to DNA, with one sodium ion. Water is present in this model but for clarity, Proteopedia does not show water in its initial scene. | ||