Proteopedia:Wishlist: Difference between revisions
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*<span style="background-color:yellow;color:green">'''SOLVED:'''</span>'' There is now a link to FirstGlance underneath the molecule for every automatically seeded page.'' In every article titled with a single PDB id code, a link to (for a random case) "Explore 2ace" that goes to '''FirstGlance in Jmol'''. The link syntax is [http://bioportal.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ace http://bioportal.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ace]. | *<span style="background-color:yellow;color:green">'''SOLVED:'''</span>'' There is now a link to FirstGlance underneath the molecule for every automatically seeded page.'' In every article titled with a single PDB id code, a link to (for a random case) "Explore 2ace" that goes to '''FirstGlance in Jmol'''. The link syntax is [http://bioportal.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ace http://bioportal.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ace]. | ||
* '''Searching''' for a '''plural''' should find the '''singular''' match, and vice versa. For example: I searched for "histocompatibility antigens" and did not find the page "Category: Histocompatibility antigen". Searching for "histocompatibility antigen" did find this page. [[User:Emartz|Emartz]] 19:00, 8 March 2008 (IST) | * '''Searching''' for a '''plural''' should find the '''singular''' match, and vice versa. For example: I searched for "histocompatibility antigens" and did not find the page "Category: Histocompatibility antigen". Searching for "histocompatibility antigen" did find this page. [[User:Emartz|Emartz]] 19:00, 8 March 2008 (IST) | ||
* '''Color keys''' displayed beneath Jmol, changing as needed with each green link. For example "alpha helix" and "beta strand" colored in the standard Jmol secondary colors. The standard keys should be pre-built and callable by name, perhaps by a parameter in the <scene ...> tag. [[User:Emartz|Emartz]] 01:59, 19 March 2008 (IST) | * '''Color keys''' displayed beneath Jmol, changing as needed with each green link. For example "alpha helix" and "beta strand" colored in the standard Jmol secondary colors. The standard keys should be pre-built and callable by name, perhaps by a parameter in the <scene ...> tag. [[User:Emartz|Emartz]] 01:59, 19 March 2008 (IST) This is a really good idea! I've had to go to other sites to figure out what things stand for and was actually wondering if there was a way to make a key, but I guess not right now. [[User:Emily Forschler|Emily Forschler]] 03:14, 6 June 2008 (IDT) | ||
* '''Biological units''' (from RCSB) should be the default initial scenes, with a view of the asymmetric unit optional, as agreed in discussion. Eric Martz plans to provide a mock-up of an advanced page that would have views from EBI PQS, EBI PISA, and RCSB biological units, with brief explanations of each. | * '''Biological units''' (from RCSB) should be the default initial scenes, with a view of the asymmetric unit optional, as agreed in discussion. Eric Martz plans to provide a mock-up of an advanced page that would have views from EBI PQS, EBI PISA, and RCSB biological units, with brief explanations of each. | ||
* '''ConSurf coloring''' can be provided as discussed with Nir Ben-Tal and Elana Erez. This could be one of the standard scenes on the proposed menu of standard scenes. | * '''ConSurf coloring''' can be provided as discussed with Nir Ben-Tal and Elana Erez. This could be one of the standard scenes on the proposed menu of standard scenes. | ||