2kmb: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
No edit summary
No edit summary
Line 1: Line 1:
[[Image:2kmb.gif|left|200px]]
[[Image:2kmb.gif|left|200px]]


{{Structure
<!--
|PDB= 2kmb |SIZE=350|CAPTION= <scene name='initialview01'>2kmb</scene>, resolution 2.0&Aring;
The line below this paragraph, containing "STRUCTURE_2kmb", creates the "Structure Box" on the page.
|SITE= <scene name='pdbsite=11:Ca+Site+1,+Protomer+1'>11</scene>, <scene name='pdbsite=12:Ca+Site+1,+Protomer+2'>12</scene>, <scene name='pdbsite=13:Ca+Site+1,+Protomer+3'>13</scene>, <scene name='pdbsite=21:Ca+Site+2,+Protomer+1'>21</scene>, <scene name='pdbsite=22:Ca+Site+2,+Protomer+2'>22</scene>, <scene name='pdbsite=23:Ca+Site+2,+Protomer+3'>23</scene>, <scene name='pdbsite=31:Ca+Site+3,+Protomer+1'>31</scene>, <scene name='pdbsite=32:Ca+Site+3,+Protomer+2'>32</scene> and <scene name='pdbsite=33:Ca+Site+3,+Protomer+3'>33</scene>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
|LIGAND= <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=MAG:ALPHA-METHYL-N-ACETYL-D-GLUCOSAMINE'>MAG</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SIA:O-SIALIC+ACID'>SIA</scene>
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
|ACTIVITY=  
or leave the SCENE parameter empty for the default display.
|GENE=  
-->
|DOMAIN=
{{STRUCTURE_2kmb| PDB=2kmb  | SCENE= }}  
|RELATEDENTRY=
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2kmb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kmb OCA], [http://www.ebi.ac.uk/pdbsum/2kmb PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2kmb RCSB]</span>
}}


'''COMPLEX OF 3'-NEUAC-LEWIS-X WITH A SELECTIN-LIKE MUTANT OF MANNOSE-BINDING PROTEIN A'''
'''COMPLEX OF 3'-NEUAC-LEWIS-X WITH A SELECTIN-LIKE MUTANT OF MANNOSE-BINDING PROTEIN A'''
Line 27: Line 24:
[[Category: Ng, K K.S.]]
[[Category: Ng, K K.S.]]
[[Category: Weis, W I.]]
[[Category: Weis, W I.]]
[[Category: lectin]]
[[Category: Lectin]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May  4 09:29:16 2008''
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:03:07 2008''

Revision as of 09:29, 4 May 2008

File:2kmb.gif

Template:STRUCTURE 2kmb

COMPLEX OF 3'-NEUAC-LEWIS-X WITH A SELECTIN-LIKE MUTANT OF MANNOSE-BINDING PROTEIN A


OverviewOverview

Rat serum mannose-binding protein in which residues 211-213 have been changed to the Lys-Lys-Lys sequence found in E-selectin binds HL-60 cells and the oligosaccharide 3'-NeuAc-Le(x). To understand how this mutant, designated K3, mimics the carbohydrate-binding properties of E-selectin, structures of K3 alone and in complexes with 3'-NeuAc-Le(x), 3'-sulfo-Le(x) and 4'-sulfo-Le(x) have been determined at 1.95-2.1 A resolution by X-ray crystallography. The region of K3 that interacts with bound oligosaccharides superimposes closely with the corresponding region of unliganded E-selectin. In each of the oligosaccharide-protein complexes, the 2- and 3-OH of Fuc coordinate Ca2+ and form a network of cooperative hydrogen bonds with amino acid side chains that also coordinate the Ca2+. Lys211 of the K3 mutant, which corresponds to Lys111 of E-selectin, interacts with each of the three bound ligands: the N zeta atom donates a hydrogen bond to the 4-OH of Gal in 3'-NeuAc-Le(x), forms a water-mediated hydrogen bond with the 4-OH of Gal in 3'-sulfo-Le(x), and forms a salt bridge with the sulfate group of 4'-sulfo-Le(x). Lys213 packs against an otherwise exposed aromatic residue and forms a water-mediated hydrogen bond with Lys211 which may help to position that residue for interactions with bound oligosaccharides. These structures are consistent with previous mutagenesis and chemical modification studies which demonstrate the importance of the Ca2+ ligands as well as Lys111 and Lys113 for carbohydrate binding in the selectins, and they provide a structural basis for understanding the selective recognition of negatively charged Le(x) derivatives by the selectins.

About this StructureAbout this Structure

2KMB is a Single protein structure of sequence from Rattus norvegicus. Full crystallographic information is available from OCA.

ReferenceReference

Structure of a selectin-like mutant of mannose-binding protein complexed with sialylated and sulfated Lewis(x) oligosaccharides., Ng KK, Weis WI, Biochemistry. 1997 Feb 4;36(5):979-88. PMID:9033386 Page seeded by OCA on Sun May 4 09:29:16 2008

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA