2de8: Difference between revisions

Revision as of 00:15, 4 May 2008

Crystal structure of porcine pancreatic elastase with a unique conformation induced by Tris

OverviewOverview

Porcine pancreatic elastase (PPE) was crystallized under new sulfate-free conditions containing 0.3 M NaCl and 50 mM tris(hydroxymethyl)aminomethane-HCl at pH 7.0. The crystal structure determined at 1.5 angstroms resolution had a unique conformation in four regions which contained loop portions. A chloride ion was bound near the catalytic triad instead of the sulfate ion in PDB entry 1qnj, a typical PPE crystal structure. However, the chloride ion did not affect the configuration of the catalytic triad. A tris(hydroxymethyl)aminomethane (Tris) molecule was bound to the S4 and S5 subsites in place of the adjacent molecule in the 1qnj crystal and played a significant role in the structural change of the region. The distortion in this region may subsequently have induced conformational changes in the other three regions. The fact that Tris and these four regions make a diagonal line in the ac plane may have affected the crystal-packing contraction along the a and c axes in the crystal compared with the typical crystal.

About this StructureAbout this Structure

2DE8 is a Single protein structure of sequence from Sus scrofa. Full crystallographic information is available from OCA.

ReferenceReference

Tris(hydroxymethyl)aminomethane induces conformational change and crystal-packing contraction of porcine pancreatic elastase., Kinoshita T, Yamaguchi A, Tada T, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2006 Jul 1;62(Pt, 7):623-6. Epub 2006 Jun 26. PMID:16820677 Page seeded by OCA on Sun May 4 00:15:37 2008

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OCA

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 [[Image:2de8.gif|left|200px]]
- {{Structure
+<!--
-|PDB= 2de8 |SIZE=350|CAPTION= <scene name='initialview01'>2de8</scene>, resolution 1.5&Aring;
+The line below this paragraph, containing "STRUCTURE_2de8", creates the "Structure Box" on the page.
-|SITE=
+You may change the PDB parameter (which sets the PDB file loaded into the applet)
-|LIGAND= <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene>
+or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Pancreatic_elastase Pancreatic elastase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.36 3.4.21.36] </span>
+or leave the SCENE parameter empty for the default display.
-|GENE=
+-->
-|DOMAIN=
+{{STRUCTURE_2de8|  PDB=2de8  |  SCENE=  }}
-|RELATEDENTRY=[[2de9|2DE9]]
-|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2de8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2de8 OCA], [http://www.ebi.ac.uk/pdbsum/2de8 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2de8 RCSB]</span>
-}}
 '''Crystal structure of porcine pancreatic elastase with a unique conformation induced by Tris'''
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 [[Category: Kinoshita, T.]]
 [[Category: Tada, T.]]
-[[Category: native strucure]]
+[[Category: Native strucure]]
-[[Category: serine protease]]
+[[Category: Serine protease]]
+''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May  4 00:15:37 2008''
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 02:33:32 2008''