7a4a: Difference between revisions

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<StructureSection load='7a4a' size='340' side='right'caption='[[7a4a]], [[Resolution|resolution]] 3.76&Aring;' scene=''>
<StructureSection load='7a4a' size='340' side='right'caption='[[7a4a]], [[Resolution|resolution]] 3.76&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[7a4a]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Ancylostoma_ceylanicum Ancylostoma ceylanicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7A4A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7A4A FirstGlance]. <br>
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7A4A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7A4A FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.76&#8491;</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Acey_s0020.g108, Y032_0020g108 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=53326 Ancylostoma ceylanicum])</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7a4a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7a4a OCA], [https://pdbe.org/7a4a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7a4a RCSB], [https://www.ebi.ac.uk/pdbsum/7a4a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7a4a ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7a4a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7a4a OCA], [https://pdbe.org/7a4a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7a4a RCSB], [https://www.ebi.ac.uk/pdbsum/7a4a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7a4a ProSAT]</span></td></tr>
</table>
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Endogenous viral elements (EVEs), accounting for 15% of our genome, serve as a genetic reservoir from which new genes can emerge. Nematode EVEs are particularly diverse and informative of virus evolution. We identify Atlas virus-an intact retrovirus-like EVE in the human hookworm Ancylostoma ceylanicum, with an envelope protein genetically related to GN-GC glycoproteins from the family Phenuiviridae. A cryo-EM structure of Atlas GC reveals a class II viral membrane fusion protein fold not previously seen in retroviruses. Atlas GC has the structural hallmarks of an active fusogen. Atlas GC trimers insert into membranes with endosomal lipid compositions and low pH. When expressed on the plasma membrane, Atlas GC has cell-cell fusion activity. With its preserved biological activities, Atlas GC has the potential to acquire a cellular function. Our work reveals structural plasticity in reverse-transcribing RNA viruses.
A bioactive phlebovirus-like envelope protein in a hookworm endogenous virus.,Merchant M, Mata CP, Liu Y, Zhai H, Protasio AV, Modis Y Sci Adv. 2022 May 13;8(19):eabj6894. doi: 10.1126/sciadv.abj6894. Epub 2022 May, 11. PMID:35544562<ref>PMID:35544562</ref>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 7a4a" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Ancylostoma ceylanicum]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Mata, C P]]
[[Category: Mata CP]]
[[Category: Merchant, M]]
[[Category: Merchant M]]
[[Category: Modis, Y]]
[[Category: Modis Y]]
[[Category: Class ii membrane fusion protein]]
[[Category: Disulfide bonding]]
[[Category: Lipid binding protein]]
[[Category: Viral protein]]

Latest revision as of 11:53, 14 July 2024

Envelope glycprotein of endogenous retrovirus Y032 (Atlas virus) from the human hookworm Ancylostoma ceylanicumEnvelope glycprotein of endogenous retrovirus Y032 (Atlas virus) from the human hookworm Ancylostoma ceylanicum

Structural highlights

Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:Electron Microscopy, Resolution 3.76Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

7a4a, resolution 3.76Å

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OCA
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