6imj: Difference between revisions

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 ==The crystal structure of Se-AsfvLIG:DNA complex==
-<StructureSection load='6imj' size='340' side='right' caption='[[6imj]], [[Resolution|resolution]] 2.55&Aring;' scene=''>
+<StructureSection load='6imj' size='340' side='right'caption='[[6imj]], [[Resolution|resolution]] 2.55&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[6imj]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IMJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6IMJ FirstGlance]. <br>
+<table><tr><td colspan='2'>[[6imj]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/African_swine_fever_virus African swine fever virus] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IMJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6IMJ FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.554&#8491;</td></tr>
-<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6imj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6imj OCA], [http://pdbe.org/6imj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6imj RCSB], [http://www.ebi.ac.uk/pdbsum/6imj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6imj ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6imj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6imj OCA], [https://pdbe.org/6imj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6imj RCSB], [https://www.ebi.ac.uk/pdbsum/6imj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6imj ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/DNLI_ASFB7 DNLI_ASFB7] Very low-fidelity DNA ligase that seals nicks in double-stranded DNA during DNA repair (PubMed:15938630). Together with the viral repair DNA polymerase X, fills the single nucleotide gaps generated by the AP endonuclease (PubMed:15938630). It is not essential for viral replication and recombination (PubMed:15938630). Displays a very low adenylation activity towards DNA with 3'-dideoxy- or 3'-amino-terminated nicks compared to regular nick DNA (PubMed:15938630).<ref>PMID:15938630</ref>
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 17: / Line 19: @@
 </div>
 <div class="pdbe-citations 6imj" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[DNA ligase 3D structures|DNA ligase 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Chen, Y Q]]
+[[Category: African swine fever virus]]
-[[Category: Gan, J H]]
+[[Category: Large Structures]]
-[[Category: Asfvlig with c:g complex]]
+[[Category: Synthetic construct]]
-[[Category: Dna binding protein]]
+[[Category: Chen YQ]]
-[[Category: Ligase-dna complex]]
+[[Category: Gan JH]]