3mdn: Difference between revisions

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==Structure of glutamine aminotransferase class-II domain protein (SPO2029) from silicibacter pomeroyi==
==Structure of glutamine aminotransferase class-II domain protein (SPO2029) from silicibacter pomeroyi==
<StructureSection load='3mdn' size='340' side='right' caption='[[3mdn]], [[Resolution|resolution]] 2.09&Aring;' scene=''>
<StructureSection load='3mdn' size='340' side='right'caption='[[3mdn]], [[Resolution|resolution]] 2.09&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3mdn]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_700808 Atcc 700808]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MDN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3MDN FirstGlance]. <br>
<table><tr><td colspan='2'>[[3mdn]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Ruegeria_pomeroyi Ruegeria pomeroyi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MDN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MDN FirstGlance]. <br>
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.09&#8491;</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SPO2029 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=89184 ATCC 700808])</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3mdn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mdn OCA], [http://pdbe.org/3mdn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3mdn RCSB], [http://www.ebi.ac.uk/pdbsum/3mdn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3mdn ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3mdn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mdn OCA], [https://pdbe.org/3mdn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3mdn RCSB], [https://www.ebi.ac.uk/pdbsum/3mdn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3mdn ProSAT]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q5LRU5_RUEPO Q5LRU5_RUEPO]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/md/3mdn_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/md/3mdn_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Atcc 700808]]
[[Category: Large Structures]]
[[Category: Almo, S C]]
[[Category: Ruegeria pomeroyi]]
[[Category: Burley, S K]]
[[Category: Almo SC]]
[[Category: Structural genomic]]
[[Category: Burley SK]]
[[Category: Ramagopal, U A]]
[[Category: Ramagopal UA]]
[[Category: Toro, R]]
[[Category: Toro R]]
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
[[Category: PSI, Protein structure initiative]]
[[Category: Transferase]]

Latest revision as of 09:28, 27 November 2024

Structure of glutamine aminotransferase class-II domain protein (SPO2029) from silicibacter pomeroyiStructure of glutamine aminotransferase class-II domain protein (SPO2029) from silicibacter pomeroyi

Structural highlights

3mdn is a 4 chain structure with sequence from Ruegeria pomeroyi. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.09Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

Q5LRU5_RUEPO

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3mdn, resolution 2.09Å

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OCA