3kd8: Difference between revisions

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OCA

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 ==Cofactor-Independent Phosphoglycerate mutase from Thermoplasma Acidophilum DSM 1728==
-<StructureSection load='3kd8' size='340' side='right' caption='[[3kd8]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
+<StructureSection load='3kd8' size='340' side='right'caption='[[3kd8]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3kd8]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"thermoplasma_acidophila"_(sic)_darland_et_al._1970 "thermoplasma acidophila" (sic) darland et al. 1970]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KD8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3KD8 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3kd8]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermoplasma_acidophilum Thermoplasma acidophilum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KD8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KD8 FirstGlance]. <br>
-</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3idd|3idd]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">apgM, Ta0413 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2303 "Thermoplasma acidophila" (sic) Darland et al. 1970])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3kd8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kd8 OCA], [https://pdbe.org/3kd8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3kd8 RCSB], [https://www.ebi.ac.uk/pdbsum/3kd8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3kd8 ProSAT]</span></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoglycerate_mutase Phosphoglycerate mutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.4.2.1 5.4.2.1] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3kd8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kd8 OCA], [http://pdbe.org/3kd8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3kd8 RCSB], [http://www.ebi.ac.uk/pdbsum/3kd8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3kd8 ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/APGM_THEAC APGM_THEAC]] Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate (By similarity).
+[https://www.uniprot.org/uniprot/APGM_THEAC APGM_THEAC] Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate (By similarity).
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
@@ Line 17: / Line 15: @@
    <jmolCheckbox>
      <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kd/3kd8_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
@@ Line 24: / Line 22: @@
 ==See Also==
-*[[Phosphoglycerate Mutase|Phosphoglycerate Mutase]]
+*[[Phosphoglycerate mutase 3D structures|Phosphoglycerate mutase 3D structures]]
 __TOC__
 </StructureSection>
-[[Category: Phosphoglycerate mutase]]
+[[Category: Large Structures]]
-[[Category: Buck, K]]
+[[Category: Thermoplasma acidophilum]]
-[[Category: Duke, N E.C]]
+[[Category: Buck K]]
-[[Category: Joachimiak, A]]
+[[Category: Duke NEC]]
-[[Category: Structural genomic]]
+[[Category: Joachimiak A]]
-[[Category: Marshall, N]]
+[[Category: Marshall N]]
-[[Category: Glycolysis]]
-[[Category: Glycolysis isomerase]]
-[[Category: Isomerase]]
-[[Category: Mcsg]]
-[[Category: Protein genomic]]
-[[Category: PSI, Protein structure initiative]]