Believe It or Not!: Difference between revisions
Jump to navigation
Jump to search
No edit summary |
No edit summary |
||
| Line 3: | Line 3: | ||
'''The most common ...''' | '''The most common ...''' | ||
* The most common Sources are [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=9606 Homo sapiens], present in 43,110 PDB structures and [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=562 Escherichia coli], present in 9,286 PDB structures. | * The most common Sources are [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=9606 Homo sapiens], present in 43,110 PDB structures and [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=562 Escherichia coli], present in 9,286 PDB structures. | ||
* The most common Ligand is '''GOL''', present in 23, | * The most common Ligand is '''GOL''', present in 23,276 PDB structures (excluding SO4) | ||
* The most common Space group is '''P 21 21''', present in 32,728 PDB structures. | * The most common Space group is '''P 21 21''', present in 32,728 PDB structures. | ||
'''The most conspicuous ...''' | '''The most conspicuous ...''' | ||
* The least popular experiment type is Solution Scattering used on 3 structures ([[1ntj]], [[1ntl]], [[1r70]]) over 230, | * The least popular experiment type is Solution Scattering used on 3 structures ([[1ntj]], [[1ntl]], [[1r70]]) over 230,446 ( 0.00%) | ||
* The most popular experiment type is X-ray Diffraction used on | * The most popular experiment type is X-ray Diffraction used on 191,023 structures over 230,446 (82.89%) | ||
* The structures with the most biomolecules are [[2zzs]], [[4dx9]] with 32 each and [[5lhy]] with 30. | * The structures with the most biomolecules are [[2zzs]], [[4dx9]] with 32 each and [[5lhy]] with 30. | ||
* The PDB structure with the most models is [[2hyn]], with 184 models. | * The PDB structure with the most models is [[2hyn]], with 184 models. | ||
* The PDB structures with the most related structures are [[ | * The PDB structures with the most related structures are [[4b2c]], [[4b2b]], [[4b1t]] with 287 related structures each. | ||
* The PDB structure with the most chains is [[4v99]] with 480 chains. | * The PDB structure with the most chains is [[4v99]] with 480 chains. | ||
* The PDB structures with the longest chain are [[4v5x]], [[4v5x]] with 7,249 amino acids (alpha carbons only) each. | * The PDB structures with the longest chain are [[4v5x]], [[4v5x]] with 7,249 amino acids (alpha carbons only) each. | ||
| Line 36: | Line 36: | ||
* The PDB structures solved with '''X-ray Diffraction''' with the '''best resolution''' are [[3nir]], [[5d8v]] with 0.48 Å each. | * The PDB structures solved with '''X-ray Diffraction''' with the '''best resolution''' are [[3nir]], [[5d8v]] with 0.48 Å each. | ||
* The '''mean resolution''' for PDB structures solved with '''Electron Crystallography''' is 2.72 ± 2.92 based on 238 structures | * The '''mean resolution''' for PDB structures solved with '''Electron Crystallography''' is 2.72 ± 2.92 based on 238 structures | ||
* The '''mean resolution''' for PDB structures solved with '''Electron Microscopy''' is 4.01 ± 3. | * The '''mean resolution''' for PDB structures solved with '''Electron Microscopy''' is 4.01 ± 3.12 based on 24,280 structures | ||
* The '''mean resolution''' for PDB structures solved with '''Fiber Diffraction''' is 3.37 ± 0.7 based on 37 structures | * The '''mean resolution''' for PDB structures solved with '''Fiber Diffraction''' is 3.37 ± 0.7 based on 37 structures | ||
* The '''mean resolution''' for PDB structures solved with '''Neutron Diffraction''' is 1.91 ± 0.37 based on 84 structures | * The '''mean resolution''' for PDB structures solved with '''Neutron Diffraction''' is 1.91 ± 0.37 based on 84 structures | ||
* The '''mean resolution''' for PDB structures solved with '''Powder Diffraction''' is 2.96 ± 0.35 based on 7 structures | * The '''mean resolution''' for PDB structures solved with '''Powder Diffraction''' is 2.96 ± 0.35 based on 7 structures | ||
* The '''mean resolution''' for PDB structures solved with '''Solution Scattering''' is 30 ± 0 based on 3 structures | * The '''mean resolution''' for PDB structures solved with '''Solution Scattering''' is 30 ± 0 based on 3 structures | ||
* The '''mean resolution''' for PDB structures solved with '''X-ray Diffraction''' is 2.12 ± 0.59 based on | * The '''mean resolution''' for PDB structures solved with '''X-ray Diffraction''' is 2.12 ± 0.59 based on 191,023 structures | ||
* The PDB structure solved with '''Electron Crystallography''' with the '''worst resolution''' is [[2dfs]] with 24.0 Å. | * The PDB structure solved with '''Electron Crystallography''' with the '''worst resolution''' is [[2dfs]] with 24.0 Å. | ||
* The PDB structures solved with '''Electron Microscopy''' with the '''worst resolution''' are [[1m8q]], [[1mvw]], [[1o18]], [[1o19]], [[1o1a]], [[1o1b]], [[1o1c]], [[1o1d]], [[1o1e]], [[1o1f]], [[1o1g]] with 70.0 Å each. | * The PDB structures solved with '''Electron Microscopy''' with the '''worst resolution''' are [[1m8q]], [[1mvw]], [[1o18]], [[1o19]], [[1o1a]], [[1o1b]], [[1o1c]], [[1o1d]], [[1o1e]], [[1o1f]], [[1o1g]] with 70.0 Å each. | ||
| Line 53: | Line 53: | ||
* The mean PDB file is 188.57K ± 327.85K based on 129,445 files. | * The mean PDB file is 188.57K ± 327.85K based on 129,445 files. | ||
* There are 4 structure files with 12 citations ([[1dtq]],[[1dtt]],[[1het]],[[3u87]]) and 5 structure files with 10 citations ([[1cc4]],[[1cc6]],[[1cj2]],[[1cj3]],[[1cj4]]). | * There are 4 structure files with 12 citations ([[1dtq]],[[1dtt]],[[1het]],[[3u87]]) and 5 structure files with 10 citations ([[1cc4]],[[1cc6]],[[1cj2]],[[1cj3]],[[1cj4]]). | ||
''Updated by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan | ''Updated by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 22 12:55:16 2025'' | ||
==Notes== | ==Notes== | ||
*[[4tst]] is a useful PDB id for a non-existing structure *Search for this page with the word '''BelieveItOrNot''' -- all the words in the real title "Believe It Or Not!" are so common that they are ignored by the search index mechanism (see [[Help:Stop Words]]), so you will not succeed searching for the real title. This page is also linked to the [[Main Page]]. | *[[4tst]] is a useful PDB id for a non-existing structure *Search for this page with the word '''BelieveItOrNot''' -- all the words in the real title "Believe It Or Not!" are so common that they are ignored by the search index mechanism (see [[Help:Stop Words]]), so you will not succeed searching for the real title. This page is also linked to the [[Main Page]]. | ||