2ro8: Difference between revisions

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==Solution structure of calcium bound soybean calmodulin isoform 1 N-terminal domain==
==Solution structure of calcium bound soybean calmodulin isoform 1 N-terminal domain==
<StructureSection load='2ro8' size='340' side='right'caption='[[2ro8]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
<StructureSection load='2ro8' size='340' side='right'caption='[[2ro8]]' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2ro8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Glycine_hispida Glycine hispida]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RO8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RO8 FirstGlance]. <br>
<table><tr><td colspan='2'>[[2ro8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Glycine_max Glycine max]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RO8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RO8 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2ro9|2ro9]], [[2roa|2roa]], [[2rob|2rob]]</div></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ro8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ro8 OCA], [https://pdbe.org/2ro8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ro8 RCSB], [https://www.ebi.ac.uk/pdbsum/2ro8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ro8 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ro8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ro8 OCA], [https://pdbe.org/2ro8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ro8 RCSB], [https://www.ebi.ac.uk/pdbsum/2ro8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ro8 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q6LEG8_SOYBN Q6LEG8_SOYBN]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Glycine hispida]]
[[Category: Glycine max]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Huang, H]]
[[Category: Huang H]]
[[Category: Ishida, H]]
[[Category: Ishida H]]
[[Category: Takaya, Y]]
[[Category: Takaya Y]]
[[Category: Vogel, H J]]
[[Category: Vogel HJ]]
[[Category: Yamniuk, A P]]
[[Category: Yamniuk AP]]
[[Category: Calcium]]
[[Category: Calmodulin isoform]]
[[Category: Metal binding protein]]
[[Category: Plant calmodulin]]
[[Category: Soybean calmodulin]]
[[Category: Target binding]]
[[Category: Target regulation]]

Latest revision as of 22:14, 29 May 2024

Solution structure of calcium bound soybean calmodulin isoform 1 N-terminal domainSolution structure of calcium bound soybean calmodulin isoform 1 N-terminal domain

Structural highlights

2ro8 is a 1 chain structure with sequence from Glycine max. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:Solution NMR
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

Q6LEG8_SOYBN

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

The intracellular calcium ion is one of the most important secondary messengers in eukaryotic cells. Ca(2+) signals are translated into physiological responses by EF-hand calcium-binding proteins such as calmodulin (CaM). Multiple CaM isoforms occur in plant cells, whereas only a single CaM protein is found in animals. Soybean CaM isoform 1 (sCaM1) shares 90% amino acid sequence identity with animal CaM (aCaM), whereas sCaM4 is only 78% identical. These two sCaM isoforms have distinct target-enzyme activation properties and physiological functions. sCaM4 is highly expressed during the self-defense reaction of the plant and activates the enzyme nitric-oxide synthase (NOS), whereas sCaM1 is incapable of activating NOS. The mechanism of selective target activation by plant CaM isoforms is poorly understood. We have determined high resolution NMR solution structures of Ca(2+)-sCaM1 and -sCaM4. These were compared with previously determined Ca(2+)-aCaM structures. For the N-lobe of the protein, the solution structures of Ca(2+)-sCaM1, -sCaM4, and -aCaM all closely resemble each other. However, despite the high sequence identity with aCaM, the C-lobe of Ca(2+)-sCaM1 has a more open conformation and consequently a larger hydrophobic target-protein binding pocket than Ca(2+)-aCaM or -sCaM4, the presence of which was further confirmed through biophysical measurements. The single Val-144 --> Met substitution in the C-lobe of Ca(2+)-sCaM1, which restores its ability to activate NOS, alters the structure of the C-lobe to a more closed conformation resembling Ca(2+)-aCaM and -sCaM4. The relationships between the structural differences in the two Ca(2+)-sCaM isoforms and their selective target activation properties are discussed.

The solution structures of two soybean calmodulin isoforms provide a structural basis for their selective target activation properties.,Ishida H, Huang H, Yamniuk AP, Takaya Y, Vogel HJ J Biol Chem. 2008 May 23;283(21):14619-28. Epub 2008 Mar 17. PMID:18347016[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

See Also

References

  1. Ishida H, Huang H, Yamniuk AP, Takaya Y, Vogel HJ. The solution structures of two soybean calmodulin isoforms provide a structural basis for their selective target activation properties. J Biol Chem. 2008 May 23;283(21):14619-28. Epub 2008 Mar 17. PMID:18347016 doi:10.1074/jbc.M801398200
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