Believe It or Not!: Difference between revisions
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'''The most common ...''' | '''The most common ...''' | ||
* The most common Sources are [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=9606 Homo sapiens], present in 11,063 PDB structures and [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=274 Thermus thermophilus], present in 5,760 PDB structures. | * The most common Sources are [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=9606 Homo sapiens], present in 11,063 PDB structures and [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=274 Thermus thermophilus], present in 5,760 PDB structures. | ||
* The most common Ligand is '''GOL''', present in 22, | * The most common Ligand is '''GOL''', present in 22,948 PDB structures (excluding SO4) | ||
* The most common Space group is '''P 21 21''', present in 32,728 PDB structures. | * The most common Space group is '''P 21 21''', present in 32,728 PDB structures. | ||
'''The most conspicuous ...''' | '''The most conspicuous ...''' | ||
* The least popular experiment type is Solution Scattering used on 3 structures ([[1ntj]], [[1ntl]], [[1r70]]) over | * The least popular experiment type is Solution Scattering used on 3 structures ([[1ntj]], [[1ntl]], [[1r70]]) over 220,115 ( 0.00%) | ||
* The most popular experiment type is X-ray Diffraction used on 184, | * The most popular experiment type is X-ray Diffraction used on 184,922 structures over 220,115 (84.01%) | ||
* The structures with the most biomolecules are [[2zzs]], [[4dx9]] with 32 each and [[5lhy]] with 30. | * The structures with the most biomolecules are [[2zzs]], [[4dx9]] with 32 each and [[5lhy]] with 30. | ||
* The PDB structure with the most models is [[2hyn]], with 184 models. | * The PDB structure with the most models is [[2hyn]], with 184 models. | ||
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* The most exotic Chemical Elements are Americium (Am [[4zhg]]), Bismuth (Bi [[4h0w]]), Cerium (Ce [[4mae]]), Curium (Cm [[4zhf]]), Dysprosium (Dy [[4ll7]]), Palladium (Pd [[4q9x]]), Plutonium (Pu [[4zhd]]), Rhenium (Re [[4k9j]]), Antimony (Sb [[4u5t]]), Zirconium (Zr [[4xyy]]) found in one PDB structure each. | * The most exotic Chemical Elements are Americium (Am [[4zhg]]), Bismuth (Bi [[4h0w]]), Cerium (Ce [[4mae]]), Curium (Cm [[4zhf]]), Dysprosium (Dy [[4ll7]]), Palladium (Pd [[4q9x]]), Plutonium (Pu [[4zhd]]), Rhenium (Re [[4k9j]]), Antimony (Sb [[4u5t]]), Zirconium (Zr [[4xyy]]) found in one PDB structure each. | ||
* The PDB structure with the largest file is [[4pth]] with 25,711,441 bytes (compressed). | * The PDB structure with the largest file is [[4pth]] with 25,711,441 bytes (compressed). | ||
* The PDB structure with the smallest file is [[3rec]] with 2, | * The PDB structure with the smallest file is [[3rec]] with 2,938 bytes (compressed). | ||
* The PDB structures with the most sources are [[4v6m]] with 5 sources each. | * The PDB structures with the most sources are [[4v6m]] with 5 sources each. | ||
*There are 551 sources that occur in only a single entry. See [[Structures with Exotic Sources]] | *There are 551 sources that occur in only a single entry. See [[Structures with Exotic Sources]] | ||
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* The PDB structures solved with '''X-ray Diffraction''' with the '''best resolution''' are [[3nir]], [[5d8v]] with 0.48 Å each. | * The PDB structures solved with '''X-ray Diffraction''' with the '''best resolution''' are [[3nir]], [[5d8v]] with 0.48 Å each. | ||
* The '''mean resolution''' for PDB structures solved with '''Electron Crystallography''' is 2.71 ± 2.94 based on 234 structures | * The '''mean resolution''' for PDB structures solved with '''Electron Crystallography''' is 2.71 ± 2.94 based on 234 structures | ||
* The '''mean resolution''' for PDB structures solved with '''Electron Microscopy''' is 4. | * The '''mean resolution''' for PDB structures solved with '''Electron Microscopy''' is 4.14 ± 3.37 based on 20,262 structures | ||
* The '''mean resolution''' for PDB structures solved with '''Fiber Diffraction''' is 3.37 ± 0.7 based on 37 structures | * The '''mean resolution''' for PDB structures solved with '''Fiber Diffraction''' is 3.37 ± 0.7 based on 37 structures | ||
* The '''mean resolution''' for PDB structures solved with '''Neutron Diffraction''' is 1.91 ± 0.35 based on 79 structures | * The '''mean resolution''' for PDB structures solved with '''Neutron Diffraction''' is 1.91 ± 0.35 based on 79 structures | ||
* The '''mean resolution''' for PDB structures solved with '''Powder Diffraction''' is 2.96 ± 0.35 based on 7 structures | * The '''mean resolution''' for PDB structures solved with '''Powder Diffraction''' is 2.96 ± 0.35 based on 7 structures | ||
* The '''mean resolution''' for PDB structures solved with '''Solution Scattering''' is 30 ± 0 based on 3 structures | * The '''mean resolution''' for PDB structures solved with '''Solution Scattering''' is 30 ± 0 based on 3 structures | ||
* The '''mean resolution''' for PDB structures solved with '''X-ray Diffraction''' is 2.12 ± 0.59 based on 184, | * The '''mean resolution''' for PDB structures solved with '''X-ray Diffraction''' is 2.12 ± 0.59 based on 184,922 structures | ||
* The PDB structure solved with '''Electron Crystallography''' with the '''worst resolution''' is [[2dfs]] with 24.0 Å. | * The PDB structure solved with '''Electron Crystallography''' with the '''worst resolution''' is [[2dfs]] with 24.0 Å. | ||
* The PDB structures solved with '''Electron Microscopy''' with the '''worst resolution''' are [[1m8q]], [[1mvw]], [[1o18]], [[1o19]], [[1o1a]], [[1o1b]], [[1o1c]], [[1o1d]], [[1o1e]], [[1o1f]], [[1o1g]] with 70.0 Å each. | * The PDB structures solved with '''Electron Microscopy''' with the '''worst resolution''' are [[1m8q]], [[1mvw]], [[1o18]], [[1o19]], [[1o1a]], [[1o1b]], [[1o1c]], [[1o1d]], [[1o1e]], [[1o1f]], [[1o1g]] with 70.0 Å each. | ||
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'''Overall Statistics ...''' | '''Overall Statistics ...''' | ||
* The mean PDB file is 189. | * The mean PDB file is 189.32K ± 329.06K based on 129,458 files. | ||
* There is 1 structure file with 12 citations ([[1dtq]]) and 3 structure files with 3 citations ([[1ca5]],[[1ca6]],[[1dsk]]). | * There is 1 structure file with 12 citations ([[1dtq]]) and 3 structure files with 3 citations ([[1ca5]],[[1ca6]],[[1dsk]]). | ||
''Updated by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 15 11: | ''Updated by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 22 15:11:53 2024'' | ||
==Notes== | ==Notes== | ||
*[[4tst]] is a useful PDB id for a non-existing structure *Search for this page with the word '''BelieveItOrNot''' -- all the words in the real title "Believe It Or Not!" are so common that they are ignored by the search index mechanism (see [[Help:Stop Words]]), so you will not succeed searching for the real title. This page is also linked to the [[Main Page]]. | *[[4tst]] is a useful PDB id for a non-existing structure *Search for this page with the word '''BelieveItOrNot''' -- all the words in the real title "Believe It Or Not!" are so common that they are ignored by the search index mechanism (see [[Help:Stop Words]]), so you will not succeed searching for the real title. This page is also linked to the [[Main Page]]. | ||