6ubl: Difference between revisions
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<StructureSection load='6ubl' size='340' side='right'caption='[[6ubl]], [[Resolution|resolution]] 1.50Å' scene=''> | <StructureSection load='6ubl' size='340' side='right'caption='[[6ubl]], [[Resolution|resolution]] 1.50Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[6ubl]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/ | <table><tr><td colspan='2'>[[6ubl]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Micromonospora_chersina Micromonospora chersina]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UBL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6UBL FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.499Å</td></tr> | ||
<tr id=' | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PLM:PALMITIC+ACID'>PLM</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ubl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ubl OCA], [https://pdbe.org/6ubl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ubl RCSB], [https://www.ebi.ac.uk/pdbsum/6ubl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ubl ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ubl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ubl OCA], [https://pdbe.org/6ubl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ubl RCSB], [https://www.ebi.ac.uk/pdbsum/6ubl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ubl ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | |||
[https://www.uniprot.org/uniprot/B2BM43_9ACTN B2BM43_9ACTN] | |||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: | [[Category: Micromonospora chersina]] | ||
[[Category: | [[Category: Bhardwaj M]] | ||
[[Category: | [[Category: Kosgei AJ]] | ||
[[Category: Miller | [[Category: Miller MD]] | ||
[[Category: Phillips | [[Category: Phillips Jr GN]] | ||
[[Category: Thorson | [[Category: Thorson JS]] | ||
[[Category: | [[Category: Van Lanen SG]] | ||
[[Category: | [[Category: Xu W]] | ||
Latest revision as of 13:19, 22 May 2024
Structure of DynF from the Dynemicin Biosynthesis Pathway of Micromonospora chersinaStructure of DynF from the Dynemicin Biosynthesis Pathway of Micromonospora chersina
Structural highlights
FunctionPublication Abstract from PubMedDynemicin is an enediyne natural product from Micromonospora chersina ATCC53710. Access to the biosynthetic gene cluster of dynemicin has enabled the in vitro study of gene products within the cluster to decipher their roles in assembling this unique molecule. This paper reports the crystal structure of DynF, the gene product of one of the genes within the biosynthetic gene cluster of dynemicin. DynF is revealed to be a dimeric eight-stranded beta-barrel structure with palmitic acid bound within a cavity. The presence of palmitic acid suggests that DynF may be involved in binding the precursor polyene heptaene, which is central to the synthesis of the ten-membered ring of the enediyne core. The crystal structure of DynF from the dynemicin-biosynthesis pathway of Micromonospora chersina.,Kosgei AJ, Miller MD, Bhardwaj M, Xu W, Thorson JS, Van Lanen SG, Phillips GN Jr Acta Crystallogr F Struct Biol Commun. 2022 Jan 1;78(Pt 1):1-7. doi:, 10.1107/S2053230X21012322. Epub 2022 Jan 1. PMID:34981769[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References
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