1x0f: Difference between revisions
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==Complex structure of the C-terminal RNA-binding domain of hnRNP D(AUF1) with telomeric DNA== | ==Complex structure of the C-terminal RNA-binding domain of hnRNP D(AUF1) with telomeric DNA== | ||
<StructureSection load='1x0f' size='340' side='right'caption='[[1x0f | <StructureSection load='1x0f' size='340' side='right'caption='[[1x0f]]' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[1x0f]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/ | <table><tr><td colspan='2'>[[1x0f]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X0F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1X0F FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1x0f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x0f OCA], [https://pdbe.org/1x0f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1x0f RCSB], [https://www.ebi.ac.uk/pdbsum/1x0f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1x0f ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1x0f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x0f OCA], [https://pdbe.org/1x0f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1x0f RCSB], [https://www.ebi.ac.uk/pdbsum/1x0f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1x0f ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
[https://www.uniprot.org/uniprot/HNRPD_HUMAN HNRPD_HUMAN] Binds with high affinity to RNA molecules that contain AU-rich elements (AREs) found within the 3'-UTR of many proto-oncogenes and cytokine mRNAs. Also binds to double- and single-stranded DNA sequences in a specific manner and functions a transcription factor. Each of the RNA-binding domains specifically can bind solely to a single-stranded non-monotonous 5'-UUAG-3' sequence and also weaker to the single-stranded 5'-TTAGGG-3' telomeric DNA repeat. Binds RNA oligonucleotides with 5'-UUAGGG-3' repeats more tightly than the telomeric single-stranded DNA 5'-TTAGGG-3' repeats. Binding of RRM1 to DNA inhibits the formation of DNA quadruplex structure which may play a role in telomere elongation. May be involved in translationally coupled mRNA turnover. Implicated with other RNA-binding proteins in the cytoplasmic deadenylation/translational and decay interplay of the FOS mRNA mediated by the major coding-region determinant of instability (mCRD) domain.<ref>PMID:11051545</ref> <ref>PMID:10080887</ref> | |||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: | [[Category: Homo sapiens]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Enokizono | [[Category: Enokizono Y]] | ||
[[Category: Ishikawa | [[Category: Ishikawa F]] | ||
[[Category: Katahira | [[Category: Katahira M]] | ||
[[Category: Konishi | [[Category: Konishi Y]] | ||
[[Category: Nagata | [[Category: Nagata K]] | ||
[[Category: Ouhashi | [[Category: Ouhashi K]] | ||
[[Category: Uesugi | [[Category: Uesugi S]] | ||