1x0f: Difference between revisions

No edit summary
No edit summary
 
Line 1: Line 1:


==Complex structure of the C-terminal RNA-binding domain of hnRNP D(AUF1) with telomeric DNA==
==Complex structure of the C-terminal RNA-binding domain of hnRNP D(AUF1) with telomeric DNA==
<StructureSection load='1x0f' size='340' side='right'caption='[[1x0f]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
<StructureSection load='1x0f' size='340' side='right'caption='[[1x0f]]' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[1x0f]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X0F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1X0F FirstGlance]. <br>
<table><tr><td colspan='2'>[[1x0f]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X0F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1X0F FirstGlance]. <br>
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1iqt|1iqt]], [[1hd0|1hd0]], [[1hd1|1hd1]], [[1wtb|1wtb]]</div></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1x0f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x0f OCA], [https://pdbe.org/1x0f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1x0f RCSB], [https://www.ebi.ac.uk/pdbsum/1x0f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1x0f ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1x0f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x0f OCA], [https://pdbe.org/1x0f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1x0f RCSB], [https://www.ebi.ac.uk/pdbsum/1x0f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1x0f ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[https://www.uniprot.org/uniprot/HNRPD_HUMAN HNRPD_HUMAN]] Binds with high affinity to RNA molecules that contain AU-rich elements (AREs) found within the 3'-UTR of many proto-oncogenes and cytokine mRNAs. Also binds to double- and single-stranded DNA sequences in a specific manner and functions a transcription factor. Each of the RNA-binding domains specifically can bind solely to a single-stranded non-monotonous 5'-UUAG-3' sequence and also weaker to the single-stranded 5'-TTAGGG-3' telomeric DNA repeat. Binds RNA oligonucleotides with 5'-UUAGGG-3' repeats more tightly than the telomeric single-stranded DNA 5'-TTAGGG-3' repeats. Binding of RRM1 to DNA inhibits the formation of DNA quadruplex structure which may play a role in telomere elongation. May be involved in translationally coupled mRNA turnover. Implicated with other RNA-binding proteins in the cytoplasmic deadenylation/translational and decay interplay of the FOS mRNA mediated by the major coding-region determinant of instability (mCRD) domain.<ref>PMID:11051545</ref> <ref>PMID:10080887</ref>
[https://www.uniprot.org/uniprot/HNRPD_HUMAN HNRPD_HUMAN] Binds with high affinity to RNA molecules that contain AU-rich elements (AREs) found within the 3'-UTR of many proto-oncogenes and cytokine mRNAs. Also binds to double- and single-stranded DNA sequences in a specific manner and functions a transcription factor. Each of the RNA-binding domains specifically can bind solely to a single-stranded non-monotonous 5'-UUAG-3' sequence and also weaker to the single-stranded 5'-TTAGGG-3' telomeric DNA repeat. Binds RNA oligonucleotides with 5'-UUAGGG-3' repeats more tightly than the telomeric single-stranded DNA 5'-TTAGGG-3' repeats. Binding of RRM1 to DNA inhibits the formation of DNA quadruplex structure which may play a role in telomere elongation. May be involved in translationally coupled mRNA turnover. Implicated with other RNA-binding proteins in the cytoplasmic deadenylation/translational and decay interplay of the FOS mRNA mediated by the major coding-region determinant of instability (mCRD) domain.<ref>PMID:11051545</ref> <ref>PMID:10080887</ref>  
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 35: Line 35:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Human]]
[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Enokizono, Y]]
[[Category: Enokizono Y]]
[[Category: Ishikawa, F]]
[[Category: Ishikawa F]]
[[Category: Katahira, M]]
[[Category: Katahira M]]
[[Category: Konishi, Y]]
[[Category: Konishi Y]]
[[Category: Nagata, K]]
[[Category: Nagata K]]
[[Category: Ouhashi, K]]
[[Category: Ouhashi K]]
[[Category: Uesugi, S]]
[[Category: Uesugi S]]
[[Category: Auf1]]
[[Category: Complex]]
[[Category: Dna-binding domain]]
[[Category: Hnrnp d]]
[[Category: Rna-binding domain]]
[[Category: Rrm]]
[[Category: Structural genomic]]
[[Category: Telomere]]
[[Category: Transcription-dna complex]]

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA