6ete: Difference between revisions

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 ==Crystal structure of KDM4D with tetrazolhydrazide compound 5==
-<StructureSection load='6ete' size='340' side='right' caption='[[6ete]], [[Resolution|resolution]] 1.47&Aring;' scene=''>
+<StructureSection load='6ete' size='340' side='right'caption='[[6ete]], [[Resolution|resolution]] 1.47&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[6ete]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ETE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6ETE FirstGlance]. <br>
+<table><tr><td colspan='2'>[[6ete]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ETE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6ETE FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BWK:[2-(1-methyl-1,2,3,4-tetrazol-4-ium-5-yl)ethanoylamino]azanium'>BWK</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.468&#8491;</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6ete FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ete OCA], [http://pdbe.org/6ete PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6ete RCSB], [http://www.ebi.ac.uk/pdbsum/6ete PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6ete ProSAT]</span></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BWK:[2-(1-methyl-1,2,3,4-tetrazol-4-ium-5-yl)ethanoylamino]azanium'>BWK</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ete FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ete OCA], [https://pdbe.org/6ete PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ete RCSB], [https://www.ebi.ac.uk/pdbsum/6ete PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ete ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/KDM4D_HUMAN KDM4D_HUMAN]] Histone demethylase that specifically demethylates 'Lys-9' of histone H3, thereby playing a central role in histone code. Does not demethylate histone H3 'Lys-4', H3 'Lys-27', H3 'Lys-36' nor H4 'Lys-20'. Demethylates both di- and trimethylated H3 'Lys-9' residue, while it has no activity on monomethylated residues. Demethylation of Lys residue generates formaldehyde and succinate.<ref>PMID:16603238</ref>
+[https://www.uniprot.org/uniprot/KDM4D_HUMAN KDM4D_HUMAN] Histone demethylase that specifically demethylates 'Lys-9' of histone H3, thereby playing a central role in histone code. Does not demethylate histone H3 'Lys-4', H3 'Lys-27', H3 'Lys-36' nor H4 'Lys-20'. Demethylates both di- and trimethylated H3 'Lys-9' residue, while it has no activity on monomethylated residues. Demethylation of Lys residue generates formaldehyde and succinate.<ref>PMID:16603238</ref>
+==See Also==
+*[[Jumonji domain-containing protein 3D structures|Jumonji domain-containing protein 3D structures]]
+*[[Lysine-specific histone demethylase 3D structures|Lysine-specific histone demethylase 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Heinemann, U]]
+[[Category: Homo sapiens]]
-[[Category: Link, A]]
+[[Category: Large Structures]]
-[[Category: Malecki, P H]]
+[[Category: Heinemann U]]
-[[Category: Weiss, M S]]
+[[Category: Link A]]
-[[Category: Cancer]]
+[[Category: Malecki PH]]
-[[Category: Epigenetic]]
+[[Category: Weiss MS]]
-[[Category: Inhibitor design]]
-[[Category: Kdm4d]]
-[[Category: Ligand binding]]
-[[Category: Oxidoreductase]]
-[[Category: Tetrazole]]
-[[Category: Tetrazolylhydrazide]]