1oqk: Difference between revisions

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 ==Structure of Mth11: A homologue of human RNase P protein Rpp29==
-<StructureSection load='1oqk' size='340' side='right'caption='[[1oqk]], [[NMR_Ensembles_of_Models | 22 NMR models]]' scene=''>
+<StructureSection load='1oqk' size='340' side='right'caption='[[1oqk]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1oqk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"methanobacterium_thermoautotrophicus"_(sic)_zeikus_and_wolfe_1972 "methanobacterium thermoautotrophicus" (sic) zeikus and wolfe 1972]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OQK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OQK FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1oqk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanothermobacter_thermautotrophicus Methanothermobacter thermautotrophicus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OQK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OQK FirstGlance]. <br>
-</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">MTH11 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=145262 "Methanobacterium thermoautotrophicus" (sic) Zeikus and Wolfe 1972])</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Ribonuclease_P Ribonuclease P], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.26.5 3.1.26.5] </span></td></tr>
 <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1oqk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oqk OCA], [https://pdbe.org/1oqk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1oqk RCSB], [https://www.ebi.ac.uk/pdbsum/1oqk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1oqk ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[https://www.uniprot.org/uniprot/RNP1_METTH RNP1_METTH]] Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.<ref>PMID:12003490</ref> <ref>PMID:14673079</ref>
+[https://www.uniprot.org/uniprot/RNP1_METTH RNP1_METTH] Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.<ref>PMID:12003490</ref> <ref>PMID:14673079</ref>
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
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 </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1oqk ConSurf].
 <div style="clear:both"></div>
-<div style="background-color:#fffaf0;">
-== Publication Abstract from PubMed ==
-We have determined the solution structure of Mth11 (Mth Rpp29), an essential subunit of the RNase P enzyme from the archaebacterium Methanothermobacter thermoautotrophicus (Mth). RNase P is a ubiquitous ribonucleoprotein enzyme primarily responsible for cleaving the 5' leader sequence during maturation of tRNAs in all three domains of life. In eubacteria, this enzyme is made up of two subunits: a large RNA ( approximately 120 kDa) responsible for mediating catalysis, and a small protein cofactor ( approximately 15 kDa) that modulates substrate recognition and is required for efficient in vivo catalysis. In contrast, multiple proteins are associated with eukaryotic and archaeal RNase P, and these proteins exhibit no recognizable homology to the conserved bacterial protein subunit. In reconstitution experiments with recombinantly expressed and purified protein subunits, we found that Mth Rpp29, a homolog of the Rpp29 protein subunit from eukaryotic RNase P, is an essential protein component of the archaeal holoenzyme. Consistent with its role in mediating protein-RNA interactions, we report that Mth Rpp29 is a member of the oligonucleotide/oligosaccharide binding fold family. In addition to a structured beta-barrel core, it possesses unstructured N- and C-terminal extensions bearing several highly conserved amino acid residues. To identify possible RNA contacts in the protein-RNA complex, we examined the interaction of the 11-kDa protein with the full 100-kDa Mth RNA subunit by using NMR chemical shift perturbation. Our findings represent a critical step toward a structural model of the RNase P holoenzyme from archaebacteria and higher organisms.
-Structure of Mth11/Mth Rpp29, an essential protein subunit of archaeal and eukaryotic RNase P.,Boomershine WP, McElroy CA, Tsai HY, Wilson RC, Gopalan V, Foster MP Proc Natl Acad Sci U S A. 2003 Dec 23;100(26):15398-403. Epub 2003 Dec 12. PMID:14673079<ref>PMID:14673079</ref>
-From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-</div>
-<div class="pdbe-citations 1oqk" style="background-color:#fffaf0;"></div>
 == References ==
 <references/>
@@ Line 34: / Line 24: @@
 </StructureSection>
 [[Category: Large Structures]]
-[[Category: Ribonuclease P]]
+[[Category: Methanothermobacter thermautotrophicus]]
-[[Category: Boomershine, W P]]
+[[Category: Boomershine WP]]
-[[Category: Foster, M P]]
+[[Category: Foster MP]]
-[[Category: Gopalan, V]]
+[[Category: Gopalan V]]
-[[Category: McElroy, C A]]
+[[Category: McElroy CA]]
-[[Category: Tsai, H]]
+[[Category: Tsai H]]
-[[Category: Archaeal rnase p protein subunit]]
-[[Category: Hydrolase]]
-[[Category: Ob fold]]