1jer: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older editNewer edit →
No edit summary
No edit summary
Line 3: Line 3:
<StructureSection load='1jer' size='340' side='right'caption='[[1jer]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
<StructureSection load='1jer' size='340' side='right'caption='[[1jer]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[1jer]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cucsa Cucsa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JER OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JER FirstGlance]. <br>
<table><tr><td colspan='2'>[[1jer]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cucumis_sativus Cucumis sativus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JER OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JER FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jer FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jer OCA], [https://pdbe.org/1jer PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jer RCSB], [https://www.ebi.ac.uk/pdbsum/1jer PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jer ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jer FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jer OCA], [https://pdbe.org/1jer PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jer RCSB], [https://www.ebi.ac.uk/pdbsum/1jer PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jer ProSAT]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/CPC_CUCSA CPC_CUCSA]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 17: Line 20:
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1jer ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1jer ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Stellacyanins are blue (type I) copper glycoproteins that differ from other members of the cupredoxin family in their spectroscopic and electron transfer properties. Until now, stellacyanins have eluded structure determination. Here we report the three-dimensional crystal structure of the 109 amino acid, non-glycosylated copper binding domain of recombinant cucumber stellacyanin refined to 1.6 A resolution. The crystallographic R-value for all 18,488 reflections (sigma &gt; 0) between 50-1.6 A is 0.195. The overall fold is organized in two beta-sheets, both with four beta-stands. Two alpha-helices are found in loop regions between beta-strands. The beta-sheets form a beta-sandwich similar to those found in other cupredoxins, but some features differ from proteins such as plastocyanin and azurin in that the beta-barrel is more flattened, there is an extra N-terminal alpha-helix, and the copper binding site is much more solvent accessible. The presence of a disulfide bond at the copper binding end of the protein confirms that cucumber stellacyanin has a phytocyanin-like fold. The ligands to copper are two histidines, one cysteine, and one glutamine, the latter replacing the methionine typically found in mononuclear blue copper proteins. The Cu-Gln bond is one of the shortest axial ligand bond distances observed to date in structurally characterized type I copper proteins. The characteristic spectroscopic properties and electron transfer reactivity of stellacyanin, which differ significantly from those of other well-characterized cupredoxins, can be explained by its more exposed copper site, its distinctive amino acid ligand composition, and its nearly tetrahedral ligand geometry. Surface features on the cucumber stellacyanin molecule that could be involved in interactions with putative redox partners are discussed.
A missing link in cupredoxins: crystal structure of cucumber stellacyanin at 1.6 A resolution.,Hart PJ, Nersissian AM, Herrmann RG, Nalbandyan RM, Valentine JS, Eisenberg D Protein Sci. 1996 Nov;5(11):2175-83. PMID:8931136<ref>PMID:8931136</ref>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 1jer" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Cucsa]]
[[Category: Cucumis sativus]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Eisenberg, D]]
[[Category: Eisenberg D]]
[[Category: Hart, P J]]
[[Category: Hart PJ]]
[[Category: Herrmann, R G]]
[[Category: Herrmann RG]]
[[Category: Nalbandyan, R M]]
[[Category: Nalbandyan RM]]
[[Category: Nersissian, A M]]
[[Category: Nersissian AM]]
[[Category: Valentine, J S]]
[[Category: Valentine JS]]
[[Category: Copper]]
[[Category: Electron transport]]
[[Category: Glycoprotein]]
[[Category: Hydroxylation]]

Revision as of 10:51, 3 April 2024

CUCUMBER STELLACYANIN, CU2+, PH 7.0CUCUMBER STELLACYANIN, CU2+, PH 7.0

Structural highlights

1jer is a 1 chain structure with sequence from Cucumis sativus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.6Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

CPC_CUCSA

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

1jer, resolution 1.60Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=1jer&oldid=4120992"