6jz4: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older edit
No edit summary
No edit summary
 
Line 3: Line 3:
<StructureSection load='6jz4' size='340' side='right'caption='[[6jz4]], [[Resolution|resolution]] 1.71&Aring;' scene=''>
<StructureSection load='6jz4' size='340' side='right'caption='[[6jz4]], [[Resolution|resolution]] 1.71&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[6jz4]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_29149 Atcc 29149]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JZ4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6JZ4 FirstGlance]. <br>
<table><tr><td colspan='2'>[[6jz4]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Ruminococcus_gnavus Ruminococcus gnavus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JZ4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6JZ4 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EVA:(2S,3R,4S,5R)-3,4,5-TRIHYDROXY-6-OXOPIPERIDINE-2-CARBOXYLIC+ACID'>EVA</scene>, <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.712&#8491;</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">uidA ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=33038 ATCC 29149])</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EVA:(2S,3R,4S,5R)-3,4,5-TRIHYDROXY-6-OXOPIPERIDINE-2-CARBOXYLIC+ACID'>EVA</scene>, <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6jz4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jz4 OCA], [https://pdbe.org/6jz4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6jz4 RCSB], [https://www.ebi.ac.uk/pdbsum/6jz4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6jz4 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6jz4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jz4 OCA], [https://pdbe.org/6jz4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6jz4 RCSB], [https://www.ebi.ac.uk/pdbsum/6jz4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6jz4 ProSAT]</span></td></tr>
</table>
</table>
<div style="background-color:#fffaf0;">
== Function ==
== Publication Abstract from PubMed ==
[https://www.uniprot.org/uniprot/Q6W7J7_RUMGN Q6W7J7_RUMGN]
Selective inhibitors of gut bacterial beta-glucuronidases (GUSs) are of particular interest in the prevention of xenobiotic-induced toxicities. This study reports the first structure-activity relationships on potency and selectivity of several iminocyclitols (2-7) for the GUSs. Complex structures of Ruminococcus gnavus GUS with 2-7 explained how charge, conformation, and substituent of iminocyclitols affect their potency and selectivity. N1 of uronic isofagomine (2) made strong electrostatic interactions with two catalytic glutamates of GUSs, resulting in the most potent inhibition (Ki &gt;/= 11 nM). C6-propyl analogue of 2 (6) displayed 700-fold selectivity for opportunistic bacterial GUSs (Ki = 74 nM for E. coli GUS and 51.8 muM for RgGUS). In comparison with 2, there was 200-fold enhancement in the selectivity, which was attributed to differential interactions between the propyl group and loop 5 residues of the GUSs. The results provide useful insights to develop potent and selective inhibitors for undesired GUSs.


Substituent Position of Iminocyclitols Determines the Potency and Selectivity for Gut Microbial Xenobiotic-Reactivating Enzymes.,Dashnyam P, Lin HY, Chen CY, Gao S, Yeh LF, Hsieh WC, Tu Z, Lin CH J Med Chem. 2020 May 14;63(9):4617-4627. doi: 10.1021/acs.jmedchem.9b01918. Epub , 2020 Mar 9. PMID:32105467<ref>PMID:32105467</ref>
==See Also==
 
*[[Galactosidase 3D structures|Galactosidase 3D structures]]
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
*[[Glucuronisidase 3D structures|Glucuronisidase 3D structures]]
</div>
<div class="pdbe-citations 6jz4" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Atcc 29149]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Dashnyam, P]]
[[Category: Dashnyam P]]
[[Category: Lin, H Y]]
[[Category: Lin HY]]
[[Category: B-glucuronidase]]
[[Category: Hydrolase]]

Latest revision as of 13:40, 27 March 2024

b-glucuronidase from Ruminococcus gnavus in complex with D-glucaro-d-lactamb-glucuronidase from Ruminococcus gnavus in complex with D-glucaro-d-lactam

Structural highlights

6jz4 is a 2 chain structure with sequence from Ruminococcus gnavus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.712Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

Q6W7J7_RUMGN

See Also

6jz4, resolution 1.71Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=6jz4&oldid=4112832"