Believe It or Not!: Difference between revisions
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'''The most common ...''' | '''The most common ...''' | ||
* The most common Sources are [ | * The most common Sources are [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=9606 Homo sapiens], present in 11,063 PDB structures and [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=274 Thermus thermophilus], present in 5,760 PDB structures. | ||
* The most common Ligand is '''GOL''', present in | * The most common Ligand is '''GOL''', present in 22,751 PDB structures (excluding SO4) | ||
* The most common Space group is '''P 21 21''', present in 32,728 PDB structures. | * The most common Space group is '''P 21 21''', present in 32,728 PDB structures. | ||
'''The most conspicuous ...''' | '''The most conspicuous ...''' | ||
* The least popular experiment type is Solution Scattering used on 3 structures ([[1ntj]], [[1ntl]], [[1r70]]) over | * The least popular experiment type is Solution Scattering used on 3 structures ([[1ntj]], [[1ntl]], [[1r70]]) over 217,389 ( 0.00%) | ||
* The most popular experiment type is X-ray Diffraction used on | * The most popular experiment type is X-ray Diffraction used on 183,285 structures over 217,389 (84.31%) | ||
* The structures with the most biomolecules are [[2zzs]], [[4dx9]] with 32 each and [[5lhy]] with 30. | * The structures with the most biomolecules are [[2zzs]], [[4dx9]] with 32 each and [[5lhy]] with 30. | ||
* The PDB structure with the most models is [[2hyn]], with 184 models. | * The PDB structure with the most models is [[2hyn]], with 184 models. | ||
* The PDB | * The PDB structure with the most related structures is [[2vb1]] with 235 related structures. | ||
* The PDB structure with the most chains is [[4v99]] with 480 chains. | * The PDB structure with the most chains is [[4v99]] with 480 chains. | ||
* The PDB structures with the longest chain are [[4v5x]], [[4v5x]] with 7,249 amino acids (alpha carbons only) each. | * The PDB structures with the longest chain are [[4v5x]], [[4v5x]] with 7,249 amino acids (alpha carbons only) each. | ||
* The PDB structures with the shortest chain (greater than one residue) are | * The PDB structures with the shortest chain (greater than one residue) are [[1cwp]], [[1d53]], [[1n38]], [[1vy6]], [[1xam]], [[3u2e]], [[4dy8]], [[4e60]], [[4ejt]], [[4g7o]], [[4jzu]], [[4jzv]], [[4lq3]], [[4nia]], [[4nku]], [[4ohy]], [[4oi0]], [[4oi1]], [[4oq8]], [[4oq9]], [[4pei]], [[4tzd]], [[4wti]], [[4wtj]], [[4wtk]], [[4wtl]], [[4wtm]], [[4x4n]], [[4x4r]], [[4x4t]], [[4x4t]], [[4x4u]], [[5tgm]] with 2 residues each. | ||
* The PDB structure with the most amino acids is [[ | * The PDB structure with the most amino acids is [[5tgm]] with 24,556 amino acids (alpha carbons only). | ||
* The PDB structure with the largest number ALTLOC is [[1zir]] with 22 alternate location. | * The PDB structure with the largest number ALTLOC is [[1zir]] with 22 alternate location. | ||
* The PDB structures with the heaviest chain are [[4v5x]], [[4v5x]] with 615,436.39 each. | * The PDB structures with the heaviest chain are [[4v5x]], [[4v5x]] with 615,436.39 each. | ||
* The PDB structures with the most ligands are [[ | * The PDB structures with the most ligands are [[4ub6]], [[4ub8]] with 20 ligands each. | ||
* The PDB structures with the largest number of distinct chemical elements are [[ | * The PDB structures with the largest number of distinct chemical elements are [[3nyh]], [[3x2q]], [[4kav]] with 11 elements each. | ||
* The 10 most popular Chemical Elements, excluding C,O,S,P,H,Na,Cl,K are | * The 10 most popular Chemical Elements, excluding C,O,S,P,H,Na,Cl,K are Magnesium (Mg) on 3,363 PDB, Zinc (Zn) on 3,230 PDB, Selenium (Se) on 2,894 PDB, Calcium (Ca) on 2,170 PDB, Iron (Fe) on 1,641 PDB, Fluorine (F) on 1,288 PDB, Manganese (Mn) on 706 PDB, Bromine (Br) on 417 PDB, Nickel (Ni) on 376 PDB and Iodine (I) on 320 PDB. | ||
* The most exotic Chemical Elements are Americium (Am [[4zhg]]), Bismuth (Bi [[4h0w]]), | * The most exotic Chemical Elements are Americium (Am [[4zhg]]), Bismuth (Bi [[4h0w]]), Cerium (Ce [[4mae]]), Curium (Cm [[4zhf]]), Dysprosium (Dy [[4ll7]]), Palladium (Pd [[4q9x]]), Plutonium (Pu [[4zhd]]), Rhenium (Re [[4k9j]]), Antimony (Sb [[4u5t]]), Zirconium (Zr [[4xyy]]) found in one PDB structure each. | ||
* The PDB structure with the largest file is [[4pth]] with | * The PDB structure with the largest file is [[4pth]] with 25,711,441 bytes (compressed). | ||
* The PDB structure with the smallest file is [[3rec]] with 2,999 bytes (compressed). | * The PDB structure with the smallest file is [[3rec]] with 2,999 bytes (compressed). | ||
* The PDB structures with the most sources are [[ | * The PDB structures with the most sources are [[4v6m]] with 5 sources each. | ||
*There are | *There are 551 sources that occur in only a single entry. See [[Structures with Exotic Sources]] | ||
'''Determination methods ...''' | '''Determination methods ...''' | ||
* The PDB structure solved with '''Electron Crystallography''' with the '''best resolution''' is [[6kj3]] with 0.6 Å. | * The PDB structure solved with '''Electron Crystallography''' with the '''best resolution''' is [[6kj3]] with 0.6 Å. | ||
* The PDB structure solved with '''Electron Microscopy''' with the '''best resolution''' is [[ | * The PDB structure solved with '''Electron Microscopy''' with the '''best resolution''' is [[8rqb]] with 1.09 Å. | ||
* The PDB structures solved with '''Fiber Diffraction''' with the '''best resolution''' are [[1hgv]], [[1hgz]], [[1hh0]] with 2.4 Å each. | * The PDB structures solved with '''Fiber Diffraction''' with the '''best resolution''' are [[1hgv]], [[1hgz]], [[1hh0]] with 2.4 Å each. | ||
* The PDB structure solved with '''Neutron Diffraction''' with the '''best resolution''' is [[4ar3]] with 1.05 Å. | * The PDB structure solved with '''Neutron Diffraction''' with the '''best resolution''' is [[4ar3]] with 1.05 Å. | ||
* The PDB structure solved with '''Powder Diffraction''' with the '''best resolution''' is [[ | * The PDB structure solved with '''Powder Diffraction''' with the '''best resolution''' is [[7qac]] with 2.29 Å. | ||
* The PDB structures solved with '''Solution Scattering''' with the '''best resolution''' are [[1ntj]], [[1ntl]], [[1r70]] with 30 Å each. | * The PDB structures solved with '''Solution Scattering''' with the '''best resolution''' are [[1ntj]], [[1ntl]], [[1r70]] with 30 Å each. | ||
* The PDB structures solved with '''X-ray Diffraction''' with the '''best resolution''' are [[3nir]], [[5d8v]] with 0.48 Å each. | * The PDB structures solved with '''X-ray Diffraction''' with the '''best resolution''' are [[3nir]], [[5d8v]] with 0.48 Å each. | ||
* The '''mean resolution''' for PDB structures solved with '''Electron Crystallography''' is 2. | * The '''mean resolution''' for PDB structures solved with '''Electron Crystallography''' is 2.71 ± 2.95 based on 232 structures | ||
* The '''mean resolution''' for PDB structures solved with '''Electron Microscopy''' is | * The '''mean resolution''' for PDB structures solved with '''Electron Microscopy''' is 4.18 ± 3.44 based on 19,213 structures | ||
* The '''mean resolution''' for PDB structures solved with '''Fiber Diffraction''' is 3.37 ± 0.7 based on 37 structures | * The '''mean resolution''' for PDB structures solved with '''Fiber Diffraction''' is 3.37 ± 0.7 based on 37 structures | ||
* The '''mean resolution''' for PDB structures solved with '''Neutron Diffraction''' is 1. | * The '''mean resolution''' for PDB structures solved with '''Neutron Diffraction''' is 1.91 ± 0.35 based on 79 structures | ||
* The '''mean resolution''' for PDB structures solved with '''Powder Diffraction''' is | * The '''mean resolution''' for PDB structures solved with '''Powder Diffraction''' is 2.96 ± 0.35 based on 7 structures | ||
* The '''mean resolution''' for PDB structures solved with '''Solution Scattering''' is 30 ± 0 based on 3 structures | * The '''mean resolution''' for PDB structures solved with '''Solution Scattering''' is 30 ± 0 based on 3 structures | ||
* The '''mean resolution''' for PDB structures solved with '''X-ray Diffraction''' is 2. | * The '''mean resolution''' for PDB structures solved with '''X-ray Diffraction''' is 2.12 ± 0.59 based on 183,285 structures | ||
* The PDB structure solved with '''Electron Crystallography''' with the '''worst resolution''' is [[2dfs]] with 24.0 Å. | * The PDB structure solved with '''Electron Crystallography''' with the '''worst resolution''' is [[2dfs]] with 24.0 Å. | ||
* The PDB structures solved with '''Electron Microscopy''' with the '''worst resolution''' are [[1m8q]], [[1mvw]], [[1o18]], [[1o19]], [[1o1a]], [[1o1b]], [[1o1c]], [[1o1d]], [[1o1e]], [[1o1f]], [[1o1g]] with 70.0 Å each. | * The PDB structures solved with '''Electron Microscopy''' with the '''worst resolution''' are [[1m8q]], [[1mvw]], [[1o18]], [[1o19]], [[1o1a]], [[1o1b]], [[1o1c]], [[1o1d]], [[1o1e]], [[1o1f]], [[1o1g]] with 70.0 Å each. | ||
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'''Overall Statistics ...''' | '''Overall Statistics ...''' | ||
* The mean PDB file is | * The mean PDB file is 189.89K ± 330.87K based on 129,461 files. | ||
* There | * There is 1 structure file with 12 citations ([[1dtq]]) and 3 structure files with 3 citations ([[1ca5]],[[1ca6]],[[1dsk]]). | ||
''Updated by [http://oca.weizmann.ac.il/oca OCA ] on | ''Updated by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 21 23:25:14 2024'' | ||
==Notes== | ==Notes== | ||
*[[4tst]] is a useful PDB id for a non-existing structure *Search for this page with the word '''BelieveItOrNot''' -- all the words in the real title "Believe It Or Not!" are so common that they are ignored by the search index mechanism (see [[Help:Stop Words]]), so you will not succeed searching for the real title. This page is also linked to the [[Main Page]]. | *[[4tst]] is a useful PDB id for a non-existing structure *Search for this page with the word '''BelieveItOrNot''' -- all the words in the real title "Believe It Or Not!" are so common that they are ignored by the search index mechanism (see [[Help:Stop Words]]), so you will not succeed searching for the real title. This page is also linked to the [[Main Page]]. | ||