5awh: Difference between revisions

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== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[5awh]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Cereibacter_sphaeroides_ATCC_17025 Cereibacter sphaeroides ATCC 17025] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5AWH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5AWH FirstGlance]. <br>
<table><tr><td colspan='2'>[[5awh]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Cereibacter_sphaeroides_ATCC_17025 Cereibacter sphaeroides ATCC 17025] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5AWH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5AWH FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5awh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5awh OCA], [https://pdbe.org/5awh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5awh RCSB], [https://www.ebi.ac.uk/pdbsum/5awh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5awh ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5awh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5awh OCA], [https://pdbe.org/5awh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5awh RCSB], [https://www.ebi.ac.uk/pdbsum/5awh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5awh ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[https://www.uniprot.org/uniprot/A4WYU7_CERS5 A4WYU7_CERS5]  
[https://www.uniprot.org/uniprot/A4WYU7_CERS5 A4WYU7_CERS5]  
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Argonaute proteins are key players in the gene silencing mechanisms mediated by small nucleic acids in all domains of life from bacteria to eukaryotes. However, little is known about the Argonaute protein that recognizes guide RNA/target DNA. Here, we determine the 2 A crystal structure of Rhodobacter sphaeroides Argonaute (RsAgo) in a complex with 18-nucleotide guide RNA and its complementary target DNA. The heteroduplex maintains Watson-Crick base-pairing even in the 3'-region of the guide RNA between the N-terminal and PIWI domains, suggesting a recognition mode by RsAgo for stable interaction with the target strand. In addition, the MID/PIWI interface of RsAgo has a system that specifically recognizes the 5' base-U of the guide RNA, and the duplex-recognition loop of the PAZ domain is important for the DNA silencing activity. Furthermore, we show that Argonaute discriminates the nucleic acid type (RNA/DNA) by recognition of the duplex structure of the seed region.
Structural basis for the recognition of guide RNA and target DNA heteroduplex by Argonaute.,Miyoshi T, Ito K, Murakami R, Uchiumi T Nat Commun. 2016 Jun 21;7:11846. doi: 10.1038/ncomms11846. PMID:27325485<ref>PMID:27325485</ref>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 5awh" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>

Latest revision as of 12:06, 20 March 2024

Rhodobacter sphaeroides Argonaute in complex with guide RNA/target DNA heteroduplexRhodobacter sphaeroides Argonaute in complex with guide RNA/target DNA heteroduplex

Structural highlights

5awh is a 6 chain structure with sequence from Cereibacter sphaeroides ATCC 17025 and Synthetic construct. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

A4WYU7_CERS5

5awh, resolution 2.00Å

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OCA
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