3ufx: Difference between revisions

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<StructureSection load='3ufx' size='340' side='right'caption='[[3ufx]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
<StructureSection load='3ufx' size='340' side='right'caption='[[3ufx]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3ufx]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_25104 Atcc 25104]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3UFX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3UFX FirstGlance]. <br>
<table><tr><td colspan='2'>[[3ufx]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_aquaticus Thermus aquaticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3UFX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3UFX FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.35&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ufx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ufx OCA], [https://pdbe.org/3ufx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ufx RCSB], [https://www.ebi.ac.uk/pdbsum/3ufx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ufx ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ufx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ufx OCA], [https://pdbe.org/3ufx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ufx RCSB], [https://www.ebi.ac.uk/pdbsum/3ufx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ufx ProSAT]</span></td></tr>
</table>
</table>
<div style="background-color:#fffaf0;">
== Function ==
== Publication Abstract from PubMed ==
[https://www.uniprot.org/uniprot/SUCD_THETH SUCD_THETH]
Succinyl-CoA synthetase (SCS) from Thermus aquaticus was characterized biochemically via measurements of the activity of the enzyme and determination of its quaternary structure as well as its stability and refolding properties. The enzyme is most active between pH 8.0 and 8.4 and its activity increases with temperature to about 339 K. Gel-filtration chromatography and sedimentation equilibrium under native conditions demonstrated that the enzyme is a heterotetramer of two alpha-subunits and two beta-subunits. The activity assays showed that the enzyme uses either ADP/ATP or GDP/GTP, but prefers GDP/GTP. This contrasts with Escherichia coli SCS, which uses GDP/GTP but prefers ADP/ATP. To understand the nucleotide preference, T. aquaticus SCS was crystallized in the presence of GDP, leading to the determination of the structure in complex with GDP-Mn(2+). A water molecule and Pro20beta in T. aquaticus take the place of Gln20beta in pig GTP-specific SCS, interacting well with the guanine base and other residues of the nucleotide-binding site. This leads to the preference for GDP/GTP, but does not hinder the binding of ADP/ATP.
 
Biochemical and structural characterization of the GTP-preferring succinyl-CoA synthetase from Thermus aquaticus.,Joyce MA, Hayakawa K, Wolodko WT, Fraser ME Acta Crystallogr D Biol Crystallogr. 2012 Jul;68(Pt 7):751-62. doi:, 10.1107/S0907444912010852. Epub 2012 Jun 15. PMID:22751660<ref>PMID:22751660</ref>
 
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 3ufx" style="background-color:#fffaf0;"></div>


==See Also==
==See Also==
*[[Succinyl-CoA synthetase 3D structures|Succinyl-CoA synthetase 3D structures]]
*[[Succinyl-CoA synthetase 3D structures|Succinyl-CoA synthetase 3D structures]]
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Atcc 25104]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Fraser, M E]]
[[Category: Thermus aquaticus]]
[[Category: Atp-grasp fold]]
[[Category: Fraser ME]]
[[Category: Ligase]]

Latest revision as of 16:57, 14 March 2024

Thermus aquaticus succinyl-CoA synthetase in complex with GDP-Mn2+Thermus aquaticus succinyl-CoA synthetase in complex with GDP-Mn2+

Structural highlights

3ufx is a 8 chain structure with sequence from Thermus aquaticus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.35Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

SUCD_THETH

See Also

3ufx, resolution 2.35Å

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