3tl1: Difference between revisions

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<StructureSection load='3tl1' size='340' side='right'caption='[[3tl1]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
<StructureSection load='3tl1' size='340' side='right'caption='[[3tl1]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3tl1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"actinomyces_coelicolor"_(muller_1908)_lieske_1921 "actinomyces coelicolor" (muller 1908) lieske 1921]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TL1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3TL1 FirstGlance]. <br>
<table><tr><td colspan='2'>[[3tl1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_coelicolor Streptomyces coelicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TL1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3TL1 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=JRO:6,7,9-TRIHYDROXY-3-METHYL-1H-BENZO[G]ISOCHROMEN-1-ONE'>JRO</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SCO5315, SC6G9.18 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1902 "Actinomyces coelicolor" (Muller 1908) Lieske 1921])</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=JRO:6,7,9-TRIHYDROXY-3-METHYL-1H-BENZO[G]ISOCHROMEN-1-ONE'>JRO</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3tl1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3tl1 OCA], [https://pdbe.org/3tl1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3tl1 RCSB], [https://www.ebi.ac.uk/pdbsum/3tl1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3tl1 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3tl1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3tl1 OCA], [https://pdbe.org/3tl1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3tl1 RCSB], [https://www.ebi.ac.uk/pdbsum/3tl1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3tl1 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[https://www.uniprot.org/uniprot/CYPC_STRCO CYPC_STRCO]] Involved in developmentally regulated synthesis of a compound biosynthetically related to polyketide antibiotics which is essential for spore color in Streptomyces coelicolor.  
[https://www.uniprot.org/uniprot/CYPC_STRCO CYPC_STRCO] Involved in developmentally regulated synthesis of a compound biosynthetically related to polyketide antibiotics which is essential for spore color in Streptomyces coelicolor.
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Aromatic polyketides are biologically active natural products. Many important pharmaceuticals are derived from aromatic polyketides. Especially important in aromatic polyketide biosynthesis is the regiospecific cyclization of a linear, preassembled polyketide chain catalyzed by aromatase/cyclase (ARO/CYC), which serves as a key control point in aromatic ring formation. How different ARO/CYCs promote different cyclization patterns is not well understood. The whiE locus of Streptomyces coelicolor A3(2) is responsible for the biosynthesis of an aromatic polyketide precursor to the gray spore pigment. The WhiE ARO/CYC catalyzes the regiospecific C9-C14 and C7-C16 cyclization and aromatization of a 24-carbon polyketide chain. WhiE ARO/CYC shares a high degree of similarity to another nonreducing PKS ARO/CYC, TcmN ARO/CYC. This paper presents the apo crystal structure of WhiE ARO/CYC, and cocrystal structures of WhiE and TcmN ARO/CYCs bound with polycyclic aromatic compounds that mimic the respective ARO/CYC products. Site-directed mutagenesis coupled with in vitro PKS reconstitution assays was used to characterize the interior pocket residues of WhiE ARO/CYC. The results confirmed that the interior pocket of ARO/CYCs is a critical determinant of polyketide cyclization specificity. A unified ARO/CYC-mediated cyclization mechanism is proposed on the basis of these structural and functional results.
 
Insight into the Molecular Basis of Aromatic Polyketide Cyclization: Crystal Structure and in Vitro Characterization of WhiE-ORFVI.,Lee MY, Ames BD, Tsai SC Biochemistry. 2012 Mar 30. PMID:22432862<ref>PMID:22432862</ref>
 
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 3tl1" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Ames, B D]]
[[Category: Streptomyces coelicolor]]
[[Category: Lee, M Y]]
[[Category: Ames BD]]
[[Category: Tang, Y]]
[[Category: Lee M-Y]]
[[Category: Tsai, S C]]
[[Category: Tang Y]]
[[Category: Zhang, W]]
[[Category: Tsai S-C]]
[[Category: Biosynthetic protein]]
[[Category: Zhang W]]
[[Category: Helix-grip fold]]
[[Category: Linear poly-beta-ketone intermediate]]
[[Category: Polyketide c9-c14 aromatase/cyclase]]

Latest revision as of 13:09, 1 March 2024

Crystal structure of the Streptomyces coelicolor WhiE ORFVI polyketide aromatase/cyclaseCrystal structure of the Streptomyces coelicolor WhiE ORFVI polyketide aromatase/cyclase

Structural highlights

3tl1 is a 2 chain structure with sequence from Streptomyces coelicolor. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.8Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

CYPC_STRCO Involved in developmentally regulated synthesis of a compound biosynthetically related to polyketide antibiotics which is essential for spore color in Streptomyces coelicolor.

3tl1, resolution 1.80Å

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OCA
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