6rjr: Difference between revisions

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<StructureSection load='6rjr' size='340' side='right'caption='[[6rjr]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
<StructureSection load='6rjr' size='340' side='right'caption='[[6rjr]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[6rjr]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RJR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6RJR FirstGlance]. <br>
<table><tr><td colspan='2'>[[6rjr]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Kluyveromyces_lactis Kluyveromyces lactis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RJR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6RJR FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.895&#8491;</td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Catalase Catalase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.6 1.11.1.6] </span></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6rjr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rjr OCA], [http://pdbe.org/6rjr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6rjr RCSB], [http://www.ebi.ac.uk/pdbsum/6rjr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6rjr ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6rjr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rjr OCA], [https://pdbe.org/6rjr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6rjr RCSB], [https://www.ebi.ac.uk/pdbsum/6rjr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6rjr ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/Q6CR58_KLULA Q6CR58_KLULA]] Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide.[RuleBase:RU004142]  
[https://www.uniprot.org/uniprot/Q6CR58_KLULA Q6CR58_KLULA] Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide.[RuleBase:RU004142]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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</div>
</div>
<div class="pdbe-citations 6rjr" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 6rjr" style="background-color:#fffaf0;"></div>
==See Also==
*[[Catalase 3D structures|Catalase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Catalase]]
[[Category: Kluyveromyces lactis]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Brangbour, C]]
[[Category: Brangbour C]]
[[Category: Fernandez, F J]]
[[Category: Fernandez FJ]]
[[Category: Fulla, D]]
[[Category: Fulla D]]
[[Category: Gomez, S]]
[[Category: Gomez S]]
[[Category: Juanhuix, J]]
[[Category: Juanhuix J]]
[[Category: Lopez-Estepa, M]]
[[Category: Lopez-Estepa M]]
[[Category: Navas-Yuste, S]]
[[Category: Navas-Yuste S]]
[[Category: Payne, A M]]
[[Category: Payne AM]]
[[Category: Rivera, W]]
[[Category: Rivera W]]
[[Category: Vega, M C]]
[[Category: Vega MC]]
[[Category: Heme]]
[[Category: Kluyveromyces lacti]]
[[Category: Nadp]]
[[Category: Oxidoreductase]]

Latest revision as of 15:21, 24 January 2024

Crystal structure of a Fungal Catalase at 1.9 AngstromCrystal structure of a Fungal Catalase at 1.9 Angstrom

Structural highlights

6rjr is a 4 chain structure with sequence from Kluyveromyces lactis. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.895Å
Ligands:, , , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

Q6CR58_KLULA Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide.[RuleBase:RU004142]

Publication Abstract from PubMed

Catalases are among the main scavengers of reactive oxygen species (ROS) present in the peroxisome, thereby preventing oxidative cellular and tissular damage. In human, multiple diseases are associated with malfunction of these organelles, which causes accumulation of ROS species and consequently the inefficient detoxification of cells. Despite intense research, much remains to be clarified about the precise molecular role of catalase in cellular homeostasis. Yeast peroxisomes and their peroxisomal catalases have been used as eukaryotic models for oxidative metabolism, ROS generation and detoxification, and associated pathologies. In order to provide reliable models for oxidative metabolism research, we have determined the high-resolution crystal structures of peroxisomal catalase from two important biotechnology and basic biology yeast models, Pichia pastoris and Kluyveromyces lactis. We have performed an extensive functional, biochemical and stability characterization of both enzymes in order to establish their differential activity profiles. Furthermore, we have analyzed the role of the peroxisomal catalase under study in the survival of yeast to oxidative burst challenges combining methanol, water peroxide, and sodium chloride. Interestingly, whereas catalase activity was induced 200-fold upon challenging the methylotrophic P. pastoris cells with methanol, the increase in catalase activity in the non-methylotrophic K. lactis was only moderate. The inhibitory effect of sodium azide and beta-mercaptoethanol over both catalases was analyzed, establishing IC50 values for both compounds that are consistent with an elevated resistance of both enzymes toward these inhibitors. Structural comparison of these two novel catalase structures allows us to rationalize the differential susceptibility to inhibitors and oxidative bursts. The inherent worth and validity of the P. pastoris and K. lactis yeast models for oxidative damage will be strengthened by the availability of reliable structural-functional information on these enzymes, which are central to our understanding of peroxisomal response toward oxidative stress.

Peroxisomal catalases from the yeasts Pichia pastoris and Kluyveromyces lactis as models for oxidative damage in higher eukaryotes.,Gomez S, Navas-Yuste S, Payne AM, Rivera W, Lopez-Estepa M, Brangbour C, Fulla D, Juanhuix J, Fernandez FJ, Vega MC Free Radic Biol Med. 2019 Sep;141:279-290. doi:, 10.1016/j.freeradbiomed.2019.06.025. Epub 2019 Jun 22. PMID:31238127[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

See Also

References

  1. Gomez S, Navas-Yuste S, Payne AM, Rivera W, Lopez-Estepa M, Brangbour C, Fulla D, Juanhuix J, Fernandez FJ, Vega MC. Peroxisomal catalases from the yeasts Pichia pastoris and Kluyveromyces lactis as models for oxidative damage in higher eukaryotes. Free Radic Biol Med. 2019 Sep;141:279-290. doi:, 10.1016/j.freeradbiomed.2019.06.025. Epub 2019 Jun 22. PMID:31238127 doi:http://dx.doi.org/10.1016/j.freeradbiomed.2019.06.025

6rjr, resolution 1.90Å

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