1v3r: Difference between revisions

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<StructureSection load='1v3r' size='340' side='right'caption='[[1v3r]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
<StructureSection load='1v3r' size='340' side='right'caption='[[1v3r]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[1v3r]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V3R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1V3R FirstGlance]. <br>
<table><tr><td colspan='2'>[[1v3r]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V3R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1V3R FirstGlance]. <br>
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1v3s|1v3s]]</div></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1v3r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v3r OCA], [https://pdbe.org/1v3r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1v3r RCSB], [https://www.ebi.ac.uk/pdbsum/1v3r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1v3r ProSAT], [https://www.topsan.org/Proteins/RSGI/1v3r TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1v3r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v3r OCA], [https://pdbe.org/1v3r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1v3r RCSB], [https://www.ebi.ac.uk/pdbsum/1v3r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1v3r ProSAT], [https://www.topsan.org/Proteins/RSGI/1v3r TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/P83820_THETH P83820_THETH]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Thet8]]
[[Category: Thermus thermophilus HB8]]
[[Category: Kaminishi, T]]
[[Category: Kaminishi T]]
[[Category: Kuramitsu, S]]
[[Category: Kuramitsu S]]
[[Category: Structural genomic]]
[[Category: Sakai H]]
[[Category: Sakai, H]]
[[Category: Shirouzu M]]
[[Category: Shirouzu, M]]
[[Category: Takemoto-Hori C]]
[[Category: Takemoto-Hori, C]]
[[Category: Terada T]]
[[Category: Terada, T]]
[[Category: Wang H]]
[[Category: Wang, H]]
[[Category: Yamaguchi H]]
[[Category: Yamaguchi, H]]
[[Category: Yokoyama S]]
[[Category: Yokoyama, S]]
[[Category: National project on protein structural and functional analyse]]
[[Category: Nppsfa]]
[[Category: Rsgi]]
[[Category: Signal transducing protein]]
[[Category: Signaling protein]]

Latest revision as of 02:57, 28 December 2023

Crystal structure of TT1020 from Thermus thermophilus HB8Crystal structure of TT1020 from Thermus thermophilus HB8

Structural highlights

1v3r is a 3 chain structure with sequence from Thermus thermophilus HB8. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.85Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

P83820_THETH

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

The Thermus thermophilus HB8 genome encodes a signal transducing PII protein, GlnK. The crystal structures of GlnK have been determined in two different space groups, P2(1)2(1)2(1) and P3(1)21. The PII protein has the T-loop, which is essential for interactions with receptor proteins. In both crystal forms, three GlnK molecules form a trimer in the asymmetric unit. In one P2(1)2(1)2(1) crystal form, the three T-loops in the trimer are disordered, while in another P2(1)2(1)2(1) crystal form, the T-loop from one molecule in the trimer is ordered. In the P3(1)21 crystal, one T-loop is ordered while the other two T-loops are disordered. The conformations of the ordered T-loops significantly differ between the two crystal forms; one makes the alpha-helix in the middle of the T-loop, while the other has an extension of the beta-hairpin. Two different conformations are captured by the crystal contacts. The observation of multiple T-loop conformations suggests that the T-loop could potentially exhibit "polysterism," which would be important for interactions with receptor proteins. The crystal structures of the nucleotide-bound forms, GlnK.ATP and GlnK.ADP, have also been determined. ATP/ADP binding within a cleft at the interface of two adjacent T. thermophilus GlnK monomers might affect the conformation of the T-loop.

Crystal structures of the signal transducing protein GlnK from Thermus thermophilus HB8.,Sakai H, Wang H, Takemoto-Hori C, Kaminishi T, Yamaguchi H, Kamewari Y, Terada T, Kuramitsu S, Shirouzu M, Yokoyama S J Struct Biol. 2005 Jan;149(1):99-110. PMID:15629661[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

  1. Sakai H, Wang H, Takemoto-Hori C, Kaminishi T, Yamaguchi H, Kamewari Y, Terada T, Kuramitsu S, Shirouzu M, Yokoyama S. Crystal structures of the signal transducing protein GlnK from Thermus thermophilus HB8. J Struct Biol. 2005 Jan;149(1):99-110. PMID:15629661 doi:10.1016/j.jsb.2004.08.007

1v3r, resolution 1.85Å

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