2ynw: Difference between revisions
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<StructureSection load='2ynw' size='340' side='right'caption='[[2ynw]], [[Resolution|resolution]] 1.70Å' scene=''> | <StructureSection load='2ynw' size='340' side='right'caption='[[2ynw]], [[Resolution|resolution]] 1.70Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[2ynw]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/ | <table><tr><td colspan='2'>[[2ynw]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YNW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YNW FirstGlance]. <br> | ||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7Å</td></tr> | ||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ynw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ynw OCA], [https://pdbe.org/2ynw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ynw RCSB], [https://www.ebi.ac.uk/pdbsum/2ynw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ynw ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ynw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ynw OCA], [https://pdbe.org/2ynw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ynw RCSB], [https://www.ebi.ac.uk/pdbsum/2ynw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ynw ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | |||
[https://www.uniprot.org/uniprot/Q704V1_PSEAI Q704V1_PSEAI] | |||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Borra | [[Category: Pseudomonas aeruginosa]] | ||
[[Category: Leiros | [[Category: Borra PS]] | ||
[[Category: Lorentzen | [[Category: Leiros H-KS]] | ||
[[Category: Samuelsen | [[Category: Lorentzen MS]] | ||
[[Category: Spencer | [[Category: Samuelsen O]] | ||
[[Category: Spencer J]] | |||
Latest revision as of 13:56, 20 December 2023
GIM-1-2Mol native. Crystal structures of Pseudomonas aeruginosa GIM- 1: active site plasticity in metallo-beta-lactamasesGIM-1-2Mol native. Crystal structures of Pseudomonas aeruginosa GIM- 1: active site plasticity in metallo-beta-lactamases
Structural highlights
FunctionPublication Abstract from PubMedMetallo-beta-lactamases (MBLs) have rapidly disseminated worldwide among clinically important Gram-negative bacteria and have challenged the therapeutic use of beta-lactam antibiotics, particularly carbapenems. The bla(GIM-1) gene, encoding one such enzyme, was first discovered in a Pseudomonas aeruginosa isolate from 2002 and has more recently been reported in Enterobacteriaceae. Here, we present crystal structures of GIM-1 in the apo-zinc (metal-free), mono-zinc (where Cys221 was found to be oxidized), and di-zinc forms, providing nine independently refined views of the enzyme. GIM-1 is distinguished from related MBLs in possessing a narrower active-site groove defined by aromatic side chains (Trp228 and Tyr233) at positions normally occupied by hydrophilic residues in other MBLs. Our structures reveal considerable flexibility in two loops (loop 1, residues 60 to 66; loop 2, residues 223 to 242) adjacent to the active site, with open and closed conformations defined by alternative hydrogen-bonding patterns involving Trp228. We suggest that this capacity for rearrangement permits GIM-1 to hydrolyze a wide range of beta-lactams in spite of possessing a more constrained active site. Our results highlight the structural diversity within the MBL enzyme family. Crystal structures of Pseudomonas aeruginosa GIM-1: active-site plasticity in metallo-beta-lactamases.,Borra PS, Samuelsen O, Spencer J, Walsh TR, Lorentzen MS, Leiros HK Antimicrob Agents Chemother. 2013 Feb;57(2):848-54. doi: 10.1128/AAC.02227-12., Epub 2012 Dec 3. PMID:23208706[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See AlsoReferences
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