2yln: Difference between revisions

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<StructureSection load='2yln' size='340' side='right'caption='[[2yln]], [[Resolution|resolution]] 1.12&Aring;' scene=''>
<StructureSection load='2yln' size='340' side='right'caption='[[2yln]], [[Resolution|resolution]] 1.12&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2yln]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"diplococcus_gonorrhoeae"_(zopf_1885)_lehmann_and_neumann_1896 "diplococcus gonorrhoeae" (zopf 1885) lehmann and neumann 1896]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YLN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YLN FirstGlance]. <br>
<table><tr><td colspan='2'>[[2yln]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Neisseria_gonorrhoeae Neisseria gonorrhoeae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YLN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YLN FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CYS:CYSTEINE'>CYS</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.12&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3zsf|3zsf]], [[2yjp|2yjp]]</div></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CYS:CYSTEINE'>CYS</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yln FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yln OCA], [https://pdbe.org/2yln PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yln RCSB], [https://www.ebi.ac.uk/pdbsum/2yln PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yln ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yln FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yln OCA], [https://pdbe.org/2yln PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yln RCSB], [https://www.ebi.ac.uk/pdbsum/2yln PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yln ProSAT]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q5F9M1_NEIG1 Q5F9M1_NEIG1]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Bulut, H]]
[[Category: Neisseria gonorrhoeae]]
[[Category: Gathmann, S]]
[[Category: Bulut H]]
[[Category: Licht, A]]
[[Category: Gathmann S]]
[[Category: Moniot, S]]
[[Category: Licht A]]
[[Category: Saenger, W]]
[[Category: Moniot S]]
[[Category: Scheffel, F]]
[[Category: Saenger W]]
[[Category: Schneider, E]]
[[Category: Scheffel F]]
[[Category: Abc-transporter]]
[[Category: Schneider E]]
[[Category: Solute-binding protein]]
[[Category: Transport protein]]
[[Category: Transporter]]

Latest revision as of 13:54, 20 December 2023

Crystal structure of the L-cystine solute receptor of Neisseria gonorrhoeae in the closed conformationCrystal structure of the L-cystine solute receptor of Neisseria gonorrhoeae in the closed conformation

Structural highlights

2yln is a 1 chain structure with sequence from Neisseria gonorrhoeae. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.12Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

Q5F9M1_NEIG1

Publication Abstract from PubMed

ATP-binding cassette (ABC) transporters are integral membrane proteins that carry a variety of substrates across biological membranes at the expense of ATP. The here considered prokaryotic canonical importers consist of three entities: an extracellular solute receptor, two membrane-intrinsic proteins forming a translocation pathway, and two cytoplasmic ATP-binding subunits. The ngo0372-74 and ngo2011-14 gene clusters from the human pathogen Neisseria gonorrhoeae were predicted by sequence homology as ABC transporters for the uptake of cystine and cysteine, respectively, and chosen for structural characterization. The structure of the receptor component Ngo0372 was obtained in a ligand-free "open" conformation and in a "closed" conformation when co-crystallized with l-cystine. Our data provide the first structural information of an l-cystine ABC transporter. Dissociation constants of 21 and 33 nM for l-cystine and l-selenocystine, respectively, were determined by isothermal titration calorimetry. In contrast, l-cystathionine and l-djenkolic acid are weak binders, while no binding was detectable for S-methyl-l-cysteine. Mutational analysis of two residues from the binding pocket, Trp97 and Tyr59, revealed that the latter is crucial for l-cystine binding. The structure of the Ngo2014 receptor was obtained in closed conformation in complex with co-purified l-cysteine. The protein binds l-cysteine with a K(d) of 26 nM. Comparison of the structures of both receptors and analysis of the ligand binding sites shed light on the mode of ligand recognition and provides insight into the tight binding of both substrates. Moreover, since l-cystine limitation leads to reduction in virulence of N. gonorrhoeae, Ngo0372 might be suited as target for an antimicrobial vaccine.

Crystal Structures of Two Solute Receptors for l-Cystine and l-Cysteine, Respectively, of the Human Pathogen Neisseria gonorrhoeae.,Bulut H, Moniot S, Licht A, Scheffel F, Gathmann S, Saenger W, Schneider E J Mol Biol. 2012 Jan 20;415(3):560-72. Epub 2011 Nov 23. PMID:22138345[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

  1. Bulut H, Moniot S, Licht A, Scheffel F, Gathmann S, Saenger W, Schneider E. Crystal Structures of Two Solute Receptors for l-Cystine and l-Cysteine, Respectively, of the Human Pathogen Neisseria gonorrhoeae. J Mol Biol. 2012 Jan 20;415(3):560-72. Epub 2011 Nov 23. PMID:22138345 doi:10.1016/j.jmb.2011.11.030

2yln, resolution 1.12Å

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