1h2g: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
No edit summary
No edit summary
 
Line 3: Line 3:
<StructureSection load='1h2g' size='340' side='right'caption='[[1h2g]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
<StructureSection load='1h2g' size='340' side='right'caption='[[1h2g]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[1h2g]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1H2G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1H2G FirstGlance]. <br>
<table><tr><td colspan='2'>[[1h2g]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1H2G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1H2G FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1ai4|1ai4]], [[1ai5|1ai5]], [[1ai6|1ai6]], [[1ai7|1ai7]], [[1ajn|1ajn]], [[1ajp|1ajp]], [[1ajq|1ajq]], [[1cp9|1cp9]], [[1e3a|1e3a]], [[1fxh|1fxh]], [[1fxv|1fxv]], [[1gk9|1gk9]], [[1gkf|1gkf]], [[1gm7|1gm7]], [[1gm8|1gm8]], [[1gm9|1gm9]], [[1pnk|1pnk]], [[1pnl|1pnl]], [[1pnm|1pnm]]</div></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Penicillin_amidase Penicillin amidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.11 3.5.1.11] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1h2g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1h2g OCA], [https://pdbe.org/1h2g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1h2g RCSB], [https://www.ebi.ac.uk/pdbsum/1h2g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1h2g ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1h2g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1h2g OCA], [https://pdbe.org/1h2g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1h2g RCSB], [https://www.ebi.ac.uk/pdbsum/1h2g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1h2g ProSAT]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/PAC_ECOLX PAC_ECOLX]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 35: Line 36:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Bacillus coli migula 1895]]
[[Category: Escherichia coli]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Penicillin amidase]]
[[Category: Brannigan JA]]
[[Category: Brannigan, J A]]
[[Category: Forney LJ]]
[[Category: Forney, L J]]
[[Category: Ladurner AG]]
[[Category: Ladurner, A G]]
[[Category: McVey CE]]
[[Category: McVey, C E]]
[[Category: Morillas M]]
[[Category: Morillas, M]]
[[Category: Virden R]]
[[Category: Virden, R]]
[[Category: Altered specificity]]
[[Category: Amidohydrolase]]
[[Category: Antibiotic resistance]]
[[Category: Hydrolase]]
[[Category: Zymogen]]

Latest revision as of 15:15, 13 December 2023

Altered substrate specificity mutant of penicillin acylaseAltered substrate specificity mutant of penicillin acylase

Structural highlights

1h2g is a 2 chain structure with sequence from Escherichia coli. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

PAC_ECOLX

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

Two mutant forms of penicillin acylase from Escherichia coli strains, selected using directed evolution for the ability to use glutaryl-L-leucine for growth [Forney, Wong and Ferber (1989) Appl. Environ. Microbiol. 55, 2550-2555], are changed within one codon, replacing the B-chain residue Phe(B71) with either Cys or Leu. Increases of up to a factor of ten in k (cat)/ K (m) values for substrates possessing a phenylacetyl leaving group are consistent with a decrease in K (s). Values of k (cat)/ K (m) for glutaryl-L-leucine are increased at least 100-fold. A decrease in k (cat)/ K (m) for the Cys(B71) mutant with increased pH is consistent with binding of the uncharged glutaryl group. The mutant proteins are more resistant to urea denaturation monitored by protein fluorescence, to inactivation in the presence of substrate either in the presence of urea or at high pH, and to heat inactivation. The crystal structure of the Leu(B71) mutant protein, solved to 2 A resolution, shows a flip of the side chain of Phe(B256) into the periphery of the catalytic centre, associated with loss of the pi-stacking interactions between Phe(B256) and Phe(B71). Molecular modelling demonstrates that glutaryl-L-leucine may bind with the uncharged glutaryl group in the S(1) subsite of either the wild-type or the Leu(B71) mutant but with greater potential freedom of rotation of the substrate leucine moiety in the complex with the mutant protein. This implies a smaller decrease in the conformational entropy of the substrate on binding to the mutant proteins and consequently greater catalytic activity.

Mutations of penicillin acylase residue B71 extend substrate specificity by decreasing steric constraints for substrate binding.,Morillas M, McVey CE, Brannigan JA, Ladurner AG, Forney LJ, Virden R Biochem J. 2003 Apr 1;371(Pt 1):143-50. PMID:12511194[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

See Also

References

  1. Morillas M, McVey CE, Brannigan JA, Ladurner AG, Forney LJ, Virden R. Mutations of penicillin acylase residue B71 extend substrate specificity by decreasing steric constraints for substrate binding. Biochem J. 2003 Apr 1;371(Pt 1):143-50. PMID:12511194 doi:10.1042/BJ20021383

1h2g, resolution 2.00Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA