7vjs: Difference between revisions
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<StructureSection load='7vjs' size='340' side='right'caption='[[7vjs]], [[Resolution|resolution]] 1.79Å' scene=''> | <StructureSection load='7vjs' size='340' side='right'caption='[[7vjs]], [[Resolution|resolution]] 1.79Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[7vjs]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7VJS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7VJS FirstGlance]. <br> | <table><tr><td colspan='2'>[[7vjs]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7VJS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7VJS FirstGlance]. <br> | ||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr> | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.792Å</td></tr> | ||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7vjs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7vjs OCA], [https://pdbe.org/7vjs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7vjs RCSB], [https://www.ebi.ac.uk/pdbsum/7vjs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7vjs ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7vjs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7vjs OCA], [https://pdbe.org/7vjs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7vjs RCSB], [https://www.ebi.ac.uk/pdbsum/7vjs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7vjs ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
[https://www.uniprot.org/uniprot/ALKB6_HUMAN ALKB6_HUMAN] Probable dioxygenase that requires molecular oxygen, alpha-ketoglutarate and iron. | |||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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</div> | </div> | ||
<div class="pdbe-citations 7vjs" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 7vjs" style="background-color:#fffaf0;"></div> | ||
==See Also== | |||
*[[Dioxygenase 3D structures|Dioxygenase 3D structures]] | |||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Homo sapiens]] | |||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Chen | [[Category: Chen Z]] | ||
[[Category: Ma | [[Category: Ma L]] | ||
Latest revision as of 20:27, 29 November 2023
Human AlkB homolog ALKBH6 in complex with Tris and NiHuman AlkB homolog ALKBH6 in complex with Tris and Ni
Structural highlights
FunctionALKB6_HUMAN Probable dioxygenase that requires molecular oxygen, alpha-ketoglutarate and iron. Publication Abstract from PubMedHuman AlkB homologue 6, ALKBH6, plays key roles in nucleic acid damage repair and tumor therapy. However, no precise structural and functional information are available for this protein. In this study, we determined atomic resolution crystal structures of human holo-ALKBH6 and its complex with ligands. AlkB members bind nucleic acids by NRLs (nucleotide recognition lids, also called Flips) which can recognize DNA/RNA and flip methylated lesions. We found that ALKBH6 has unusual Flip1 and Flip2 domains, distinct from other AlkB family members both in sequence and conformation. Moreover, we show that its unique Flip3 domain has multiple unreported functions, such as discriminating against double-stranded nucleic acids, blocking the active center, binding other proteins, and in suppressing tumor growth. Structure analyses and substrate screening reveal how ALKBH6 discriminates between different types of nucleic acids and may also function as a nucleic acid demethylase. Interestingly, structure-based interacting partner screening not only uncovered an unidentified interaction of transcription repressor ZMYND11 and ALKBH6 in tumor suppression, but also reveals crosstalk between histone modification and nucleic acid modification in epigenetic regulation. Taken together, these results shed light on the molecular mechanism underlying ALKBH6-associated nucleic acid damage repair and tumor therapy. Structural insights into the interactions and epigenetic functions of human nucleic acid repair protein ALKBH6.,Ma L, Lu H, Tian Z, Yang M, Ma J, Shang G, Liu Y, Xie M, Wang G, Wu W, Zhang Z, Dai S, Chen Z J Biol Chem. 2022 Feb 1:101671. doi: 10.1016/j.jbc.2022.101671. PMID:35120926[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See AlsoReferences
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