5nwf: Difference between revisions

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<StructureSection load='5nwf' size='340' side='right'caption='[[5nwf]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
<StructureSection load='5nwf' size='340' side='right'caption='[[5nwf]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[5nwf]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"enterococcus_proteiformis"_thiercelin_and_jouhaud_1903 "enterococcus proteiformis" thiercelin and jouhaud 1903]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NWF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5NWF FirstGlance]. <br>
<table><tr><td colspan='2'>[[5nwf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterococcus_faecalis Enterococcus faecalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NWF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5NWF FirstGlance]. <br>
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">D350_01176 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1351 "Enterococcus proteiformis" Thiercelin and Jouhaud 1903])</td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5nwf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nwf OCA], [http://pdbe.org/5nwf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5nwf RCSB], [http://www.ebi.ac.uk/pdbsum/5nwf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5nwf ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5nwf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nwf OCA], [https://pdbe.org/5nwf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5nwf RCSB], [https://www.ebi.ac.uk/pdbsum/5nwf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5nwf ProSAT]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/U6S0Y1_ENTFL U6S0Y1_ENTFL]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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</div>
</div>
<div class="pdbe-citations 5nwf" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5nwf" style="background-color:#fffaf0;"></div>
==See Also==
*[[Fic protein 3D structures|Fic protein 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Enterococcus proteiformis thiercelin and jouhaud 1903]]
[[Category: Enterococcus faecalis]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Cherfils, J]]
[[Category: Cherfils J]]
[[Category: Veyron, S]]
[[Category: Veyron S]]
[[Category: Toxin]]

Latest revision as of 15:12, 22 November 2023

Enterococcus faecalis FIC protein (H111A).Enterococcus faecalis FIC protein (H111A).

Structural highlights

5nwf is a 2 chain structure with sequence from Enterococcus faecalis. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.6Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

U6S0Y1_ENTFL

Publication Abstract from PubMed

FIC proteins regulate molecular processes from bacteria to humans by catalyzing post-translational modifications (PTM), the most frequent being the addition of AMP or AMPylation. In many AMPylating FIC proteins, a structurally conserved glutamate represses AMPylation and, in mammalian FICD, also supports deAMPylation of BiP/GRP78, a key chaperone of the unfolded protein response. Currently, a direct signal regulating these FIC proteins has not been identified. Here, we use X-ray crystallography and in vitro PTM assays to address this question. We discover that Enterococcus faecalis FIC (EfFIC) catalyzes both AMPylation and deAMPylation and that the glutamate implements a multi-position metal switch whereby Mg(2+) and Ca(2+) control AMPylation and deAMPylation differentially without a conformational change. Remarkably, Ca(2+) concentration also tunes deAMPylation of BiP by human FICD. Our results suggest that the conserved glutamate is a signature of AMPylation/deAMPylation FIC bifunctionality and identify metal ions as diffusible signals that regulate such FIC proteins directly.

A Ca(2+)-regulated deAMPylation switch in human and bacterial FIC proteins.,Veyron S, Oliva G, Rolando M, Buchrieser C, Peyroche G, Cherfils J Nat Commun. 2019 Mar 8;10(1):1142. doi: 10.1038/s41467-019-09023-1. PMID:30850593[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

See Also

References

  1. Veyron S, Oliva G, Rolando M, Buchrieser C, Peyroche G, Cherfils J. A Ca(2+)-regulated deAMPylation switch in human and bacterial FIC proteins. Nat Commun. 2019 Mar 8;10(1):1142. doi: 10.1038/s41467-019-09023-1. PMID:30850593 doi:http://dx.doi.org/10.1038/s41467-019-09023-1

5nwf, resolution 2.60Å

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OCA