6jf5: Difference between revisions
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<StructureSection load='6jf5' size='340' side='right'caption='[[6jf5]], [[Resolution|resolution]] 2.00Å' scene=''> | <StructureSection load='6jf5' size='340' side='right'caption='[[6jf5]], [[Resolution|resolution]] 2.00Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[6jf5]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JF5 OCA]. For a <b>guided tour on the structure components</b> use [ | <table><tr><td colspan='2'>[[6jf5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Acinetobacter_baumannii Acinetobacter baumannii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JF5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6JF5 FirstGlance]. <br> | ||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=K2U:(3~{R},4~{R})-4-oxidanyl-3-(phenylmethyl)-4-(phenylmethylsulfanyl)butanoic+acid'>K2U</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2Å</td></tr> | ||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K2U:(3~{R},4~{R})-4-oxidanyl-3-(phenylmethyl)-4-(phenylmethylsulfanyl)butanoic+acid'>K2U</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6jf5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jf5 OCA], [https://pdbe.org/6jf5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6jf5 RCSB], [https://www.ebi.ac.uk/pdbsum/6jf5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6jf5 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
[ | [https://www.uniprot.org/uniprot/A0A098SKQ8_ACIBA A0A098SKQ8_ACIBA] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163] | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Acinetobacter baumannii]] | |||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Ho TH]] | |||
[[Category: Ho | [[Category: Kang LW]] | ||
[[Category: Kang | [[Category: Lee IH]] | ||
[[Category: Lee | |||
Latest revision as of 13:07, 22 November 2023
K2U bound crystal structure of class I type b peptide deformylase from Acinetobacter baumanniiK2U bound crystal structure of class I type b peptide deformylase from Acinetobacter baumannii
Structural highlights
FunctionA0A098SKQ8_ACIBA Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163] |
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