5yac: Difference between revisions

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OCA

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 ==Crystal structure of WT Trm5b from Pyrococcus abyssi==
-<StructureSection load='5yac' size='340' side='right' caption='[[5yac]], [[Resolution|resolution]] 3.30&Aring;' scene=''>
+<StructureSection load='5yac' size='340' side='right'caption='[[5yac]], [[Resolution|resolution]] 3.30&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5yac]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrab Pyrab]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YAC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YAC FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5yac]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_abyssi_GE5 Pyrococcus abyssi GE5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YAC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5YAC FirstGlance]. <br>
-</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">trm5b, PYRAB07390, PAB0505 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272844 PYRAB])</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.3&#8491;</td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/tRNA_(guanine(37)-N(1))-methyltransferase tRNA (guanine(37)-N(1))-methyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.228 2.1.1.228] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5yac FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yac OCA], [https://pdbe.org/5yac PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5yac RCSB], [https://www.ebi.ac.uk/pdbsum/5yac PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5yac ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5yac FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yac OCA], [http://pdbe.org/5yac PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yac RCSB], [http://www.ebi.ac.uk/pdbsum/5yac PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yac ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/TRM5B_PYRAB TRM5B_PYRAB]] Specifically methylates the N1 position of guanosine-37 in various tRNAs.<ref>PMID:20382657</ref>
+[https://www.uniprot.org/uniprot/TRM5B_PYRAB TRM5B_PYRAB] Specifically methylates the N1 position of guanosine-37 in various tRNAs.<ref>PMID:20382657</ref>
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 21: / Line 20: @@
 ==See Also==
-*[[TRNA methyltransferase|TRNA methyltransferase]]
+*[[TRNA methyltransferase 3D structures|TRNA methyltransferase 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Pyrab]]
+[[Category: Large Structures]]
-[[Category: Wu, J]]
+[[Category: Pyrococcus abyssi GE5]]
-[[Category: Xie, W]]
+[[Category: Wu J]]
-[[Category: Open conformation]]
+[[Category: Xie W]]
-[[Category: Rna binding protein]]
-[[Category: Trna maturation]]
-[[Category: Trna methyltransferase]]
-[[Category: Wyosine biosynthesis]]