5wu7: Difference between revisions
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<StructureSection load='5wu7' size='340' side='right'caption='[[5wu7]], [[Resolution|resolution]] 2.31Å' scene=''> | <StructureSection load='5wu7' size='340' side='right'caption='[[5wu7]], [[Resolution|resolution]] 2.31Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[5wu7]] is a 2 chain structure with sequence from [ | <table><tr><td colspan='2'>[[5wu7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5WU7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5WU7 FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.31Å</td></tr> | ||
<tr id=' | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5wu7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5wu7 OCA], [https://pdbe.org/5wu7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5wu7 RCSB], [https://www.ebi.ac.uk/pdbsum/5wu7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5wu7 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | |||
[https://www.uniprot.org/uniprot/O50094_PYRHO O50094_PYRHO] | |||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Pyrococcus horikoshii]] | [[Category: Pyrococcus horikoshii OT3]] | ||
[[Category: Ha | [[Category: Ha N-C]] | ||
[[Category: Jo | [[Category: Jo I]] | ||
[[Category: Na | [[Category: Na S]] | ||
Latest revision as of 19:54, 8 November 2023
Crystal structure of GH57-type branching enzyme from hyperthermophilic archaeon Pyrococcus horikoshiiCrystal structure of GH57-type branching enzyme from hyperthermophilic archaeon Pyrococcus horikoshii
Structural highlights
FunctionPublication Abstract from PubMedGlycogen branching enzyme (GBE) catalyzes the formation of alpha-1,6-branching points during glycogenesis by cleaving alpha-1,4 bonds and making new alpha-1,6 bonds. Most GBEs belong to the glycoside hydrolase 13 family (GH13), but new GBEs in the GH57 family have been isolated from Archaea. Here, we determined the crystal structure of a GH57 GBE from the hyperthermophilic archaeon Pyrococcus horikoshii (PhGBE) at a resolution of 2.3 A. PhGBE exhibits both alpha-1,6-branching activity and endo-alpha-1,4 hydrolytic activity. PhGBE has a central (beta/alpha)7-barrel domain that contains an embedded helix domain and an alpha-helix-rich C-terminal domain. The active-site cleft is located at the interface of the central and C-terminal domains. Amino acid substitution at Trp22, which is separate from the catalytic nucleophilic residue, abolished both enzymatic activities, indicating that Trp22 might be responsible for substrate recognition. We also observed that shortening of the flexible loop near the catalytic residue changed branched chain lengths of the reaction products with increased hydrolytic activity. Taken together, our findings propose a molecular mechanism for how GH57 GBEs exhibit the two activities and where the substrate binds the enzyme. Structural basis for the transglycosylase activity of a GH57-type glycogen branching enzyme from Pyrococcus horikoshii.,Na S, Park M, Jo I, Cha J, Ha NC Biochem Biophys Res Commun. 2017 Mar 18;484(4):850-856. doi:, 10.1016/j.bbrc.2017.02.002. Epub 2017 Feb 3. PMID:28163025[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References
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