4n75: Difference between revisions
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==Structural Basis of BamA-mediate Outer Membrane Protein Biogenesis== | ==Structural Basis of BamA-mediate Outer Membrane Protein Biogenesis== | ||
<StructureSection load='4n75' size='340' side='right'caption='[[4n75]]' scene=''> | <StructureSection load='4n75' size='340' side='right'caption='[[4n75]], [[Resolution|resolution]] 2.60Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4N75 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4N75 FirstGlance]. <br> | <table><tr><td colspan='2'>[[4n75]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4N75 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4N75 FirstGlance]. <br> | ||
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4n75 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4n75 OCA], [https://pdbe.org/4n75 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4n75 RCSB], [https://www.ebi.ac.uk/pdbsum/4n75 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4n75 ProSAT]</span></td></tr> | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.604Å</td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4n75 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4n75 OCA], [https://pdbe.org/4n75 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4n75 RCSB], [https://www.ebi.ac.uk/pdbsum/4n75 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4n75 ProSAT]</span></td></tr> | |||
</table> | </table> | ||
== Function == | |||
[https://www.uniprot.org/uniprot/BAMA_ECOLI BAMA_ECOLI] Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. Constitutes, with BamD, the core component of the assembly machinery.<ref>PMID:15951436</ref> <ref>PMID:16102012</ref> <ref>PMID:16824102</ref> <ref>PMID:20378773</ref> <ref>PMID:21823654</ref> | |||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
In gram-negative bacteria, the assembly of outer membrane proteins (OMPs) requires a beta-barrel assembly machinery (BAM) complex, of which BamA is an essential and evolutionarily conserved component. To elucidate the mechanism of BamA-mediated OMP biogenesis, we determined the crystal structure of the C-terminal transmembrane domain of BamA from Escherichia coli (EcBamA) at 2.6 A resolution. The structure reveals 2 distinct features. First, a portion of the extracellular side of the beta barrel is composed of 5 markedly short beta strands, and the loops stemming from these beta strands form a potential surface cavity, filled by a portion of the L6 loop that includes the conserved VRGF/Y motif found in the Omp85 family. Second, the 4 extracellular loops L3, L4, L6, and L7 of EcBamA form a dome over the barrel, stabilized by a salt-bridge interaction network. Functional data show that hydrophilic-to-hydrophobic mutations of the potential hydrophilic surface cavity and a single Arg547Ala point mutation that may destabilize the dome severely affect the function of EcBamA. Our structure of the EcBamA beta barrel and structure-based mutagenesis studies suggest that the transmembrane beta strands of OMP substrates may integrate into the outer membrane at the interface of the first and last beta strands of the EcBamA barrel, whereas the soluble loops or domains may be transported out of the cell via the hydrophilic surface cavity on dislocation of the VRGF/Y motif of L6. In addition, the dome over the barrel may play an important role in maintaining the efficiency of OMP biogenesis.-Ni, D., Wang, Y., Yang, X., Zhou, H., Hou, X., Cao, B., Lu, Z., Zhao, X., Yang, K., Huang, Y. Structural and functional analysis of the beta-barrel domain of BamA from Escherichia coli. | |||
Structural and functional analysis of the beta-barrel domain of BamA from Escherichia coli.,Ni D, Wang Y, Yang X, Zhou H, Hou X, Cao B, Lu Z, Zhao X, Yang K, Huang Y FASEB J. 2014 Mar 11. PMID:24619089<ref>PMID:24619089</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
</div> | |||
<div class="pdbe-citations 4n75" style="background-color:#fffaf0;"></div> | |||
==See Also== | ==See Also== | ||
*[[Bam complex|Bam complex]] | *[[Bam complex|Bam complex]] | ||
*[[Bam complex 3D structures|Bam complex 3D structures]] | *[[Bam complex 3D structures|Bam complex 3D structures]] | ||
== References == | |||
<references/> | |||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Escherichia coli K-12]] | |||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Ni DC]] | [[Category: Ni DC]] | ||
Latest revision as of 17:46, 8 November 2023
Structural Basis of BamA-mediate Outer Membrane Protein BiogenesisStructural Basis of BamA-mediate Outer Membrane Protein Biogenesis
Structural highlights
FunctionBAMA_ECOLI Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. Constitutes, with BamD, the core component of the assembly machinery.[1] [2] [3] [4] [5] Publication Abstract from PubMedIn gram-negative bacteria, the assembly of outer membrane proteins (OMPs) requires a beta-barrel assembly machinery (BAM) complex, of which BamA is an essential and evolutionarily conserved component. To elucidate the mechanism of BamA-mediated OMP biogenesis, we determined the crystal structure of the C-terminal transmembrane domain of BamA from Escherichia coli (EcBamA) at 2.6 A resolution. The structure reveals 2 distinct features. First, a portion of the extracellular side of the beta barrel is composed of 5 markedly short beta strands, and the loops stemming from these beta strands form a potential surface cavity, filled by a portion of the L6 loop that includes the conserved VRGF/Y motif found in the Omp85 family. Second, the 4 extracellular loops L3, L4, L6, and L7 of EcBamA form a dome over the barrel, stabilized by a salt-bridge interaction network. Functional data show that hydrophilic-to-hydrophobic mutations of the potential hydrophilic surface cavity and a single Arg547Ala point mutation that may destabilize the dome severely affect the function of EcBamA. Our structure of the EcBamA beta barrel and structure-based mutagenesis studies suggest that the transmembrane beta strands of OMP substrates may integrate into the outer membrane at the interface of the first and last beta strands of the EcBamA barrel, whereas the soluble loops or domains may be transported out of the cell via the hydrophilic surface cavity on dislocation of the VRGF/Y motif of L6. In addition, the dome over the barrel may play an important role in maintaining the efficiency of OMP biogenesis.-Ni, D., Wang, Y., Yang, X., Zhou, H., Hou, X., Cao, B., Lu, Z., Zhao, X., Yang, K., Huang, Y. Structural and functional analysis of the beta-barrel domain of BamA from Escherichia coli. Structural and functional analysis of the beta-barrel domain of BamA from Escherichia coli.,Ni D, Wang Y, Yang X, Zhou H, Hou X, Cao B, Lu Z, Zhao X, Yang K, Huang Y FASEB J. 2014 Mar 11. PMID:24619089[6] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See AlsoReferences
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