3ws2: Difference between revisions
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<StructureSection load='3ws2' size='340' side='right'caption='[[3ws2]], [[Resolution|resolution]] 2.10Å' scene=''> | <StructureSection load='3ws2' size='340' side='right'caption='[[3ws2]], [[Resolution|resolution]] 2.10Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[3ws2]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Chromohalobacter_sp. | <table><tr><td colspan='2'>[[3ws2]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Chromohalobacter_sp._560 Chromohalobacter sp. 560]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WS2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3WS2 FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1Å</td></tr> | ||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CS:CESIUM+ION'>CS</scene></td></tr> | |||
<tr id=' | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ws2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ws2 OCA], [https://pdbe.org/3ws2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ws2 RCSB], [https://www.ebi.ac.uk/pdbsum/3ws2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ws2 ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ws2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ws2 OCA], [https://pdbe.org/3ws2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ws2 RCSB], [https://www.ebi.ac.uk/pdbsum/3ws2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ws2 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | |||
[https://www.uniprot.org/uniprot/Q76LX5_9GAMM Q76LX5_9GAMM] | |||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Chromohalobacter sp. 560]] | |||
[[Category: Chromohalobacter sp. | |||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Adachi | [[Category: Adachi M]] | ||
[[Category: Arai | [[Category: Arai S]] | ||
[[Category: Ishibashi | [[Category: Ishibashi M]] | ||
[[Category: Kuroki | [[Category: Kuroki R]] | ||
[[Category: Matsumoto | [[Category: Matsumoto F]] | ||
[[Category: Okazaki | [[Category: Okazaki N]] | ||
[[Category: Shimizu | [[Category: Shimizu R]] | ||
[[Category: Tamada | [[Category: Tamada T]] | ||
[[Category: Tokunaga | [[Category: Tokunaga H]] | ||
[[Category: Tokunaga | [[Category: Tokunaga M]] | ||
[[Category: Yamada | [[Category: Yamada M]] | ||
[[Category: Yonezawa | [[Category: Yonezawa Y]] | ||
Latest revision as of 16:24, 8 November 2023
N288Q-N321Q mutant BETA-LACTAMASE DERIVED FROM CHROMOHALOBACTER SP.560 (Condition-1C)N288Q-N321Q mutant BETA-LACTAMASE DERIVED FROM CHROMOHALOBACTER SP.560 (Condition-1C)
Structural highlights
FunctionPublication Abstract from PubMedEnvironmentally friendly absorbents are needed for Sr(2+) and Cs(+), as the removal of the radioactive Sr(2+) and Cs(+) that has leaked from the Fukushima Nuclear Power Plant is one of the most important problems in Japan. Halophilic proteins are known to have many acidic residues on their surface that can provide specific binding sites for metal ions such as Cs(+) or Sr(2+). The crystal structure of a halophilic beta-lactamase from Chromohalobacter sp. 560 (HaBLA) was determined to resolutions of between 1.8 and 2.9 A in space group P31 using X-ray crystallography. Moreover, the locations of bound Sr(2+) and Cs(+) ions were identified by anomalous X-ray diffraction. The location of one Cs(+)-specific binding site was identified in HaBLA even in the presence of a ninefold molar excess of Na(+) (90 mM Na(+)/10 mM Cs(+)). From an activity assay using isothermal titration calorimetry, the bound Sr(2+) and Cs(+) ions do not significantly affect the enzymatic function of HaBLA. The observation of a selective and high-affinity Cs(+)-binding site provides important information that is useful for the design of artificial Cs(+)-binding sites that may be useful in the bioremediation of radioactive isotopes. Structure of a highly acidic beta-lactamase from the moderate halophile Chromohalobacter sp. 560 and the discovery of a Cs(+)-selective binding site.,Arai S, Yonezawa Y, Okazaki N, Matsumoto F, Shibazaki C, Shimizu R, Yamada M, Adachi M, Tamada T, Kawamoto M, Tokunaga H, Ishibashi M, Blaber M, Tokunaga M, Kuroki R Acta Crystallogr D Biol Crystallogr. 2015 Mar 1;71(Pt 3):541-54. doi:, 10.1107/S1399004714027734. Epub 2015 Feb 26. PMID:25760604[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See AlsoReferences
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