5mg1: Difference between revisions
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==Structure of the photosensory module of Deinococcus phytochrome by serial femtosecond X-ray crystallography== | ==Structure of the photosensory module of Deinococcus phytochrome by serial femtosecond X-ray crystallography== | ||
<StructureSection load='5mg1' size='340' side='right' caption='[[5mg1]], [[Resolution|resolution]] 3.30Å' scene=''> | <StructureSection load='5mg1' size='340' side='right'caption='[[5mg1]], [[Resolution|resolution]] 3.30Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[5mg1]] is a 1 chain structure with sequence from [ | <table><tr><td colspan='2'>[[5mg1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Deinococcus_radiodurans_R1 Deinococcus radiodurans R1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5MG1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5MG1 FirstGlance]. <br> | ||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=LBV:3-[2-[(Z)-[3-(2-CARBOXYETHYL)-5-[(Z)-(4-ETHENYL-3-METHYL-5-OXIDANYLIDENE-PYRROL-2-YLIDENE)METHYL]-4-METHYL-PYRROL-1-IUM-2-YLIDENE]METHYL]-5-[(Z)-[(3E)-3-ETHYLIDENE-4-METHYL-5-OXIDANYLIDENE-PYRROLIDIN-2-YLIDENE]METHYL]-4-METHYL-1H-PYRROL-3-YL]PROPANOIC+ACID'>LBV</scene | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.3Å</td></tr> | ||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LBV:3-[2-[(Z)-[3-(2-CARBOXYETHYL)-5-[(Z)-(4-ETHENYL-3-METHYL-5-OXIDANYLIDENE-PYRROL-2-YLIDENE)METHYL]-4-METHYL-PYRROL-1-IUM-2-YLIDENE]METHYL]-5-[(Z)-[(3E)-3-ETHYLIDENE-4-METHYL-5-OXIDANYLIDENE-PYRROLIDIN-2-YLIDENE]METHYL]-4-METHYL-1H-PYRROL-3-YL]PROPANOIC+ACID'>LBV</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5mg1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5mg1 OCA], [https://pdbe.org/5mg1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5mg1 RCSB], [https://www.ebi.ac.uk/pdbsum/5mg1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5mg1 ProSAT]</span></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | |||
</table> | </table> | ||
== Function == | == Function == | ||
[ | [https://www.uniprot.org/uniprot/BPHY_DEIRA BPHY_DEIRA] Photoreceptor which exists in two forms that are reversibly interconvertible by light: the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region. Has also a slight blue shift for the far-red maximum. Could also absorb green light. May participate in regulating pigment synthesis like the carotenoid deinoxanthin which could protect the bacterium from intense visible light. | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: | [[Category: Deinococcus radiodurans R1]] | ||
[[Category: | [[Category: Large Structures]] | ||
[[Category: Allaire | [[Category: Allaire M]] | ||
[[Category: Alonso-Mori | [[Category: Alonso-Mori R]] | ||
[[Category: Andi | [[Category: Andi B]] | ||
[[Category: Brewster | [[Category: Brewster AS]] | ||
[[Category: Burgie | [[Category: Burgie ES]] | ||
[[Category: Clinger | [[Category: Clinger J]] | ||
[[Category: Fuller | [[Category: Fuller FD]] | ||
[[Category: Gul | [[Category: Gul S]] | ||
[[Category: Kern | [[Category: Kern J]] | ||
[[Category: Nelsen | [[Category: Nelsen S]] | ||
[[Category: Orville | [[Category: Orville AM]] | ||
[[Category: Phillips | [[Category: Phillips Jr GN]] | ||
[[Category: Sauter | [[Category: Sauter NK]] | ||
[[Category: Stan | [[Category: Stan C]] | ||
[[Category: Vierstra | [[Category: Vierstra RD]] | ||
[[Category: Yachandra | [[Category: Yachandra VK]] | ||
[[Category: Yano | [[Category: Yano J]] | ||
[[Category: Young | [[Category: Young ID]] | ||