1nzd: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
No edit summary
No edit summary
Line 1: Line 1:
[[Image:1nzd.jpg|left|200px]]
[[Image:1nzd.jpg|left|200px]]


{{Structure
<!--
|PDB= 1nzd |SIZE=350|CAPTION= <scene name='initialview01'>1nzd</scene>, resolution 2.&Aring;
The line below this paragraph, containing "STRUCTURE_1nzd", creates the "Structure Box" on the page.
|SITE=
You may change the PDB parameter (which sets the PDB file loaded into the applet)
|LIGAND= <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=UPG:URIDINE-5&#39;-DIPHOSPHATE-GLUCOSE'>UPG</scene>
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA_beta-glucosyltransferase DNA beta-glucosyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.27 2.4.1.27] </span>
or leave the SCENE parameter empty for the default display.
|GENE= BGT ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10665 Enterobacteria phage T4])
-->
|DOMAIN=
{{STRUCTURE_1nzd| PDB=1nzd  | SCENE= }}  
|RELATEDENTRY=[[1j39|1J39]]
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1nzd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nzd OCA], [http://www.ebi.ac.uk/pdbsum/1nzd PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1nzd RCSB]</span>
}}


'''T4 phage BGT-D100A mutant in complex with UDP-glucose: Form I'''
'''T4 phage BGT-D100A mutant in complex with UDP-glucose: Form I'''
Line 28: Line 25:
[[Category: Lariviere, L.]]
[[Category: Lariviere, L.]]
[[Category: Morera, S.]]
[[Category: Morera, S.]]
[[Category: glycosyltransferase]]
[[Category: Glycosyltransferase]]
[[Category: gt-b]]
[[Category: Gt-b]]
[[Category: udp-glucose]]
[[Category: Udp-glucose]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May  3 03:10:28 2008''
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 22:37:41 2008''

Revision as of 03:10, 3 May 2008

File:1nzd.jpg

Template:STRUCTURE 1nzd

T4 phage BGT-D100A mutant in complex with UDP-glucose: Form I


OverviewOverview

T4 phage beta-glucosyltransferase (BGT) is an inverting glycosyltransferase (GT) that transfers glucose from uridine diphospho-glucose (UDP-glucose) to an acceptor modified DNA. BGT belongs to the GT-B structural superfamily, represented, so far, by five different inverting or retaining GT families. Here, we report three high-resolution X-ray structures of BGT and a point mutant solved in the presence of UDP-glucose. The two co-crystal structures of the D100A mutant show that, unlike the wild-type enzyme, this mutation prevents glucose hydrolysis. This strongly indicates that Asp100 is the catalytic base. We obtained the wild-type BGT-UDP-glucose complex by soaking substrate-free BGT crystals. Comparison with a previous structure of BGT solved in the presence of the donor product UDP and an acceptor analogue provides the first model of an inverting GT-B enzyme in which both the donor and acceptor substrates are bound to the active site. The structural analyses support the in-line displacement reaction mechanism previously proposed, locate residues involved in donor substrate specificity and identify the catalytic base.

About this StructureAbout this Structure

1NZD is a Single protein structure of sequence from Enterobacteria phage t4. Full crystallographic information is available from OCA.

ReferenceReference

Crystal structures of the T4 phage beta-glucosyltransferase and the D100A mutant in complex with UDP-glucose: glucose binding and identification of the catalytic base for a direct displacement mechanism., Lariviere L, Gueguen-Chaignon V, Morera S, J Mol Biol. 2003 Jul 25;330(5):1077-86. PMID:12860129 Page seeded by OCA on Sat May 3 03:10:28 2008

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA