3aq9: Difference between revisions
No edit summary |
No edit summary |
||
| Line 3: | Line 3: | ||
<StructureSection load='3aq9' size='340' side='right'caption='[[3aq9]], [[Resolution|resolution]] 1.74Å' scene=''> | <StructureSection load='3aq9' size='340' side='right'caption='[[3aq9]], [[Resolution|resolution]] 1.74Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[3aq9]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/ | <table><tr><td colspan='2'>[[3aq9]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Tetrahymena_pyriformis Tetrahymena pyriformis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AQ9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AQ9 FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.74Å</td></tr> | ||
<tr id=' | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3aq9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3aq9 OCA], [https://pdbe.org/3aq9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3aq9 RCSB], [https://www.ebi.ac.uk/pdbsum/3aq9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3aq9 ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3aq9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3aq9 OCA], [https://pdbe.org/3aq9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3aq9 RCSB], [https://www.ebi.ac.uk/pdbsum/3aq9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3aq9 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | |||
[https://www.uniprot.org/uniprot/TRHBN_TETPY TRHBN_TETPY] | |||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
| Line 20: | Line 22: | ||
==See Also== | ==See Also== | ||
*[[Hemoglobin|Hemoglobin]] | *[[Hemoglobin|Hemoglobin]] | ||
*[[Hemoglobin 3D structures|Hemoglobin 3D structures]] | |||
*[[Sandbox 12345|Sandbox 12345]] | *[[Sandbox 12345|Sandbox 12345]] | ||
== References == | == References == | ||
| Line 26: | Line 29: | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: | [[Category: Tetrahymena pyriformis]] | ||
[[Category: Igarashi | [[Category: Igarashi J]] | ||
[[Category: Kobayashi | [[Category: Kobayashi K]] | ||
[[Category: Matsuoka | [[Category: Matsuoka A]] | ||
Latest revision as of 17:32, 1 November 2023
Crystal structure of truncated hemoglobin from Tetrahymena pyriformis, Q50E mutant, Fe(III) formCrystal structure of truncated hemoglobin from Tetrahymena pyriformis, Q50E mutant, Fe(III) form
Structural highlights
FunctionPublication Abstract from PubMedTruncated hemoglobins (trHbs) are distributed from bacteria to unicellular eukaryotes and have roles in oxygen transport and nitric oxide detoxification. It is known that trHbs exist in ciliates of the Tetrahymena group, but trHb structure and function remain poorly understood. To investigate trHb function with respect to stability of bound oxygen and protein structure, we measured the oxygen binding kinetics of Tetrahymena pyriformis trHb, and determined the crystal structure of the protein. The O(2) association and dissociation rate constants of T. pyriformis trHb were 5.5 muM(-1 )s(-1) and 0.18 s(-1), respectively. The autooxidation rate constant was 3.8 x 10(-3) h(-1). These values are similar to those of HbN from Mycobacterium tuberculosis. The three-dimensional structure of an Fe(II)-O(2) complex of T. pyriformis trHb was determined at 1.73-A resolution. Tyr25 (B10) and Gln46 (E7) were hydrogen-bonded to a heme-bound O(2) molecule. Tyr25 donated a hydrogen bond to the terminal oxygen atom, whereas Gln46 hydrogen-bonded to the proximal oxygen atom. Furthermore, Tyr25 was hydrogen-bonded to the Gln46 and Gln50 (E11) residues. Mutations at Tyr25, Gln46, and Gln50 increased the O(2) dissociation and autooxidation rate constants. An Fe(III)-H(2)O complex of T. pyriformis trHb was formed following reaction of the Fe(II)-O(2) complex of T. pyriformis trHb, in a crystal state, with nitric oxide. This suggests that T. pyriformis trHb functions in nitric oxide detoxification. A hydrogen-bonding network formed by the B10-E7-E11 residues of a truncated hemoglobin from Tetrahymena pyriformis is critical for stability of bound oxygen and nitric oxide detoxification.,Igarashi J, Kobayashi K, Matsuoka A J Biol Inorg Chem. 2011 Feb 5. PMID:21298303[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See AlsoReferences
|
| ||||||||||||||||||