2dya: Difference between revisions
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<StructureSection load='2dya' size='340' side='right'caption='[[2dya]], [[Resolution|resolution]] 1.77Å' scene=''> | <StructureSection load='2dya' size='340' side='right'caption='[[2dya]], [[Resolution|resolution]] 1.77Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[2dya]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/ | <table><tr><td colspan='2'>[[2dya]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DYA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DYA FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.77Å</td></tr> | ||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | |||
<tr id=' | |||
< | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dya FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dya OCA], [https://pdbe.org/2dya PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dya RCSB], [https://www.ebi.ac.uk/pdbsum/2dya PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dya ProSAT], [https://www.topsan.org/Proteins/RSGI/2dya TOPSAN]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dya FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dya OCA], [https://pdbe.org/2dya PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dya RCSB], [https://www.ebi.ac.uk/pdbsum/2dya PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dya ProSAT], [https://www.topsan.org/Proteins/RSGI/2dya TOPSAN]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
[https://www.uniprot.org/uniprot/NDK_PYRHO NDK_PYRHO] Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. | |||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Pyrococcus horikoshii OT3]] | |||
[[Category: Pyrococcus horikoshii]] | [[Category: Kato-Murayama M]] | ||
[[Category: Kato-Murayama | [[Category: Murayama K]] | ||
[[Category: Murayama | [[Category: Shirouzu M]] | ||
[[Category: Terada T]] | |||
[[Category: Shirouzu | [[Category: Yokoyama S]] | ||
[[Category: Terada | |||
[[Category: Yokoyama | |||
Latest revision as of 11:32, 25 October 2023
Crystal structure of complex between Adenine nucleotide and nucleoside diphosphate kinaseCrystal structure of complex between Adenine nucleotide and nucleoside diphosphate kinase
Structural highlights
FunctionNDK_PYRHO Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. Evolutionary Conservation Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf. See Also |
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