Ribonucleotide reductase 3D structures: Difference between revisions

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**[[6cwo]], [[6cwq]] - FjRNR + Mn – ''Flavobacterium johnsoniae''<br />
**[[6cwo]], [[6cwq]] - FjRNR + Mn – ''Flavobacterium johnsoniae''<br />
**[[6gp2]], [[6gp3]] - RNR R2 – ''Mesoplasma florum''<br />
**[[6gp2]], [[6gp3]] - RNR R2 – ''Mesoplasma florum''<br />
**[[7aik]], [[7ail]] - AaRNR R2 <br />
**[[7aik]], [[7ail]], [[7q39]], [[7q3c]] - AaRNR R2 <br />
**[[6y2n]] - RNR R2 – ''Saccharopolyspora erythraea''<br />
**[[6y2n]] - RNR R2 – ''Saccharopolyspora erythraea''<br />
**[[6ebz]], [[6ebz]] - AuRNR R2 – ''Aerococcus urinae''<br />
**[[6ebz]], [[6ebz]] - AuRNR R2 – ''Aerococcus urinae''<br />
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**[[7mdi]] - RNR R1 + R2 + CDP + DTP – ''Neisseria gonorrhoea'' - Cryo EM<br />
**[[7mdi]] - RNR R1 + R2 + CDP + DTP – ''Neisseria gonorrhoea'' - Cryo EM<br />


*'''Class Ib RNR''' ; NrdE – large subunit; NrdF – small subunit; NrdI
*'''Class Ib RNR''' ; NrdE – large subunit; NrdF – small subunit; NrdI – FMN containing flavoprotein


**[[6cgm]] - BaRNR NrdE  – ''Bacillus subtilis''<br />
**[[6cgm]] - BaRNR NrdE  – ''Bacillus subtilis''<br />
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**[[4bmu]] - BcRNR NrdF + Mn<br />
**[[4bmu]] - BcRNR NrdF + Mn<br />
**[[4bmo]], [[4bmp]] - BcRNR NrdF + NrdI + Fe + FMN<br />
**[[4bmo]], [[4bmp]] - BcRNR NrdF + NrdI + Fe + FMN<br />
**[[7z3d]], [[7z3e]] - BcRNR NrdF + NrdI + Mn + FMN<br />
**[[4m1f]] - EcRNR NrdF<br />
**[[4m1f]] - EcRNR NrdF<br />
**[[3n37]] - EcRNR NrdF + Mn<br />
**[[3n37]] - EcRNR NrdF + Mn<br />
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**[[3mjo]] - CaRNR NrdF + Mn - ''Corynebacterium ammoniagenes'' <br />
**[[3mjo]] - CaRNR NrdF + Mn - ''Corynebacterium ammoniagenes'' <br />
**[[1kgn]], [[1kgo]], [[1kgp]], [[1oqu]], [[3dhz]] - CaRNR NrdF + Fe<br />
**[[1kgn]], [[1kgo]], [[1kgp]], [[1oqu]], [[3dhz]] - CaRNR NrdF + Fe<br />
**[[6ebq]] - AuRNR NrdI + FMN<br />


*Class Id RNR; NrdB – small subunit
*Class Id RNR or ribonucleotide-diphosphate reductase; NrdB – small subunit


**[[6sf4]], [[6sf5]] - RNR β subunit  – ''Leeuwenhoekiella blandensis''<br />
**[[6sf4]], [[6sf5]] - RNR β subunit  – ''Leeuwenhoekiella blandensis''<br />
**[[6dqw]] - FjRNR α subunit <br />
**[[6cwo]], [[6cwq]] - FjRNR b subunit 1-324 + Mn – ''Flavobacterium johnsoniae''<br />
**[[6dqx]] - RNR α subunit  – ''Actinobacillus ureae''<br />
**[[8dq4]], [[8dq5]] - FjRNR b subunit (mutant) + Mn <br />
**[[6dqw]] - FjRNR a subunit 1-565<br />
**[[6dqx]] - RNR a subunit  – ''Actinobacillus ureae''<br />
**[[8dq3]] - RNR b subunit  + Mn – ''Aggregatibacter actinomycetemcomitans''<br />
 
*Class Ie RNR
 
**[[6ebo]] - AuRNR beta subunit - ''Aerococcus urinae'' <br />
**[[7mms]], [[7mmt]], [[7mmu]], [[7mmv]], [[7mmw]] - AuRNR beta subunit + Cu<br />
**[[6ebp]] - AuRNR beta subunit + L-Dopa<br />
**[[6ebz]] - AuRNR beta subunit + L-Dopa + SCN<br />
**[[6ebq]] - AuRNR NrdI + FMN<br />
**[[7mmp]], [[7mmq]] - AuRNR + NrdI + FMN<br />
**[[7mmr]] - AuRNR + NrdI + FMN + Cu<br />
**[[6dqx]] - RNR α subunit  – ''Actinobacillu
s ureae''<br />


*'''Class II ribonucleotide reductase'''
*'''Class II ribonucleotide reductase'''
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**[[7b9p]], [[7b9q]] – RNR + DTP – ''Rhodobacter sphaeroides''  <br />
**[[7b9p]], [[7b9q]] – RNR + DTP – ''Rhodobacter sphaeroides''  <br />
*Anaerobic ribonucleotide-triphosphate reductase
**[[8p23]], [[8p27]], [[8p28]], [[8p2c]], [[8p2d]], [[8p2s]], [[8p39]] – ARNR + DTP – ''Segatella copri''  - Cryo EM<br />
*RNR
**[[7urg]] – RNR + TTP – ''Synechococcus'' phage – Cryo EM  <br />


}}
}}


[[Category:Topic Page]]
[[Category:Topic Page]]

Revision as of 12:57, 18 October 2023

3D Structures of Ribonucleotide reductase3D Structures of Ribonucleotide reductase

Updated on 18-October-2023

s ureae

  • Class II ribonucleotide reductase
    • 1xjf, 4col – TmRNR + DATP – Thermotoga maritima
    • 4coi, 4com, 4con – TmRNR
    • 1xjg, 1xjk, 1xje, 1xjn, 4coj - TmRNR + 2 nucleotides
    • 1xjj - TmRNR + GTP
    • 1xjm - TmRNR + TTP
    • 3o0n - TmRNR + TTP + Co + Mg + deoxyadenosine + B12
    • 3o0o - TmRNR + TTP + GDP + Mg + deoxyadenosine + B12
    • 3o0q - TmRNR + TTP + GDP + Mg + adenosine
    • 1l1l – RNR (mutant) – Lactobacillus leichmannii
  • Class III ribonucleotide reductase
    • 1h78, 1h79, 1h7a, 1hk8 – T4RNR (mutant) + nucleotide triphosphate – bacteriophage T4
    • 1h7b – T4RNR (mutant)
    • 4u3e – TmRNR large subunit
  • Vitamin B12-dependent RNR
    • 7b9p, 7b9q – RNR + DTP – Rhodobacter sphaeroides
  • Anaerobic ribonucleotide-triphosphate reductase
  • RNR
    • 7urg – RNR + TTP – Synechococcus phage – Cryo EM

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Michal Harel
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