6n5h: Difference between revisions
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<StructureSection load='6n5h' size='340' side='right'caption='[[6n5h]], [[Resolution|resolution]] 1.72Å' scene=''> | <StructureSection load='6n5h' size='340' side='right'caption='[[6n5h]], [[Resolution|resolution]] 1.72Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[6n5h]] is a 1 chain structure with sequence from [ | <table><tr><td colspan='2'>[[6n5h]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Trichoderma_reesei_QM9414 Trichoderma reesei QM9414]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6N5H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6N5H FirstGlance]. <br> | ||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AUB:4-[(TRANS-4-{[(3S,5S,7S)-TRICYCLO[3.3.1.1~3,7~]DEC-1-YLCARBAMOYL]AMINO}CYCLOHEXYL)OXY]BENZOIC+ACID'>AUB</scene></td></tr> | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.717Å</td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AUB:4-[(TRANS-4-{[(3S,5S,7S)-TRICYCLO[3.3.1.1~3,7~]DEC-1-YLCARBAMOYL]AMINO}CYCLOHEXYL)OXY]BENZOIC+ACID'>AUB</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6n5h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6n5h OCA], [https://pdbe.org/6n5h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6n5h RCSB], [https://www.ebi.ac.uk/pdbsum/6n5h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6n5h ProSAT]</span></td></tr> | |||
</table> | </table> | ||
== Function == | |||
[https://www.uniprot.org/uniprot/G0R7E2_HYPJQ G0R7E2_HYPJQ] | |||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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</div> | </div> | ||
<div class="pdbe-citations 6n5h" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 6n5h" style="background-color:#fffaf0;"></div> | ||
==See Also== | |||
*[[Epoxide hydrolase 3D structures|Epoxide hydrolase 3D structures]] | |||
== References == | == References == | ||
<references/> | <references/> | ||
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</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Trichoderma reesei | [[Category: Trichoderma reesei QM9414]] | ||
[[Category: Adriano | [[Category: Adriano PP]] | ||
[[Category: Chambergo | [[Category: Chambergo FS]] | ||
[[Category: Dias | [[Category: Dias MV]] | ||
[[Category: Hammock | [[Category: Hammock BD]] | ||
[[Category: Morisseau | [[Category: Morisseau C]] | ||
[[Category: Oliveira | [[Category: Oliveira GS]] | ||
[[Category: Ribeiro | [[Category: Ribeiro JA]] | ||
Latest revision as of 09:45, 11 October 2023
Crystal structure of an epoxide hydrolase from Trichoderma reesei in complex with inhibitor 5Crystal structure of an epoxide hydrolase from Trichoderma reesei in complex with inhibitor 5
Structural highlights
FunctionPublication Abstract from PubMedEpoxide hydrolases (EHs) are enzymes involved in the metabolism of endogenous and exogenous epoxides, and the development of EH inhibitors has important applications in the medicine. In humans, EH inhibitors are being tested in the treatment of cardiovascular diseases and show potent anti-inflammatory effects. EH inhibitors are also considerate promising molecules against infectious diseases. EHs are functionally very well studied, but only a few members have its three-dimensional structures characterized. Recently, a new EH from the filamentous fungi Trichoderma reseei (TrEH) was reported, and a series of urea or amide-based inhibitors were identified. In this study, we describe the crystallographic structures of TrEH in complex with five different urea or amide-based inhibitors with resolutions ranging from 2.6 to 1.7A. The analysis of these structures reveals the molecular basis of the inhibition of these compounds. We could also observe that these inhibitors occupy the whole extension of the active site groove and only a few conformational changes are involved. Understanding the structural basis EH interactions with different inhibitors might substantially contribute for the study of fungal metabolism and in the development of novel and more efficient antifungal drugs against pathogenic Trichoderma species. The molecular structure of an epoxide hydrolase from Trichoderma reesei in complex with urea or amide-based inhibitors.,de Oliveira GS, Adriani PP, Ribeiro JA, Morisseau C, Hammock BD, Dias MVB, Chambergo FS Int J Biol Macromol. 2019 May 15;129:653-658. doi:, 10.1016/j.ijbiomac.2019.02.070. Epub 2019 Feb 13. PMID:30771398[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See AlsoReferences
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